Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 3.9e-50 201.1 94 100.0
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.6e-35 152.5 91 70.3
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.3e-34 149.4 91 67.0
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.3e-34 149.4 91 69.2
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 6.7e-34 147.1 91 69.2
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.1e-31 139.8 91 65.9
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 2.4e-31 138.7 93 63.4
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 5.3e-31 137.5 92 65.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 6.9e-31 137.1 92 63.0
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 6.9e-31 137.1 92 63.0
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 6.9e-31 137.1 92 63.0
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 9.0e-31 136.7 92 62.0
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 9.0e-31 136.7 92 62.0
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 9.0e-31 136.7 89 64.0
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 9.0e-31 136.7 92 63.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 1.2e-30 136.3 93 62.4
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 1.2e-30 136.3 93 62.4
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.2e-30 136.3 92 62.0
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.2e-30 136.3 92 62.0
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.2e-30 136.3 92 62.0
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.2e-30 136.3 92 62.0
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.2e-30 136.3 92 62.0
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.2e-30 136.3 92 63.0
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.5e-30 136.0 92 62.0
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.5e-30 136.0 92 62.0
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 1.5e-30 136.0 92 62.0
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.5e-30 136.0 92 60.9
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 1.5e-30 136.0 92 62.0
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.0e-30 135.6 92 62.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 2.0e-30 135.6 92 62.0
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 4.5e-30 134.4 92 63.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 5.8e-30 134.0 92 60.9
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 5.8e-30 134.0 93 63.4
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 7.6e-30 133.7 92 63.0
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 7.6e-30 133.7 92 60.9
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 7.6e-30 133.7 92 62.0
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 9.9e-30 133.3 92 59.8
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 9.9e-30 133.3 92 59.8
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 9.9e-30 133.3 92 59.8
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 9.9e-30 133.3 92 59.8
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.3e-29 132.9 92 59.8
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.3e-29 132.9 92 59.8
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.7e-29 132.5 89 62.9
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.7e-29 132.5 92 60.9
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.7e-29 132.5 92 60.9
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 1.7e-29 132.5 92 60.9
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.2e-29 132.1 92 60.9
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.2e-29 132.1 92 62.0
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.2e-29 132.1 92 58.7
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 59.8
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 60.9
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 60.9
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 59.8
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 60.9
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 59.8
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 60.9
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 60.9
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 60.9
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 2.9e-29 131.7 92 58.7
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.8e-29 131.3 92 60.9
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.9e-29 131.0 92 60.9
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.9e-29 131.0 92 60.9
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 4.9e-29 131.0 92 60.9
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 4.9e-29 131.0 93 60.2
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 4.9e-29 131.0 92 58.7
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 58.7
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 59.8
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 59.8
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 57.6
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 62.0
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 59.8
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 59.8
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 6.4e-29 130.6 92 59.8
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 8.4e-29 130.2 92 57.6
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.1e-28 129.8 92 62.0
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.1e-28 129.8 92 62.0
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.1e-28 129.8 92 62.0
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.1e-28 129.8 92 62.0
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.1e-28 129.8 92 62.0
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.1e-28 129.8 92 59.8
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 1.4e-28 129.4 92 57.6
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.4e-28 129.4 92 58.7
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 1.4e-28 129.4 92 58.7
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.9e-28 129.0 92 59.8
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.9e-28 129.0 92 58.7
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.9e-28 129.0 89 60.7
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.9e-28 129.0 89 60.7
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.9e-28 129.0 92 59.8
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.9e-28 129.0 92 59.8
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 2.5e-28 128.6 92 56.5
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 58.7
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.2e-28 128.3 88 62.5
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.2e-28 128.3 88 62.5
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 55.4
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 57.6
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 56.5
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 56.5
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 56.5
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 3.2e-28 128.3 92 59.8
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 4.2e-28 127.9 88 62.5
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 5.5e-28 127.5 92 57.6
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 5.5e-28 127.5 85 62.4
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 5.5e-28 127.5 98 57.1
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 5.5e-28 127.5 92 57.6
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 5.5e-28 127.5 92 58.7
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 7.1e-28 127.1 92 57.6
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 7.1e-28 127.1 93 59.1
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 9.3e-28 126.7 92 57.6
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 9.3e-28 126.7 92 57.6
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.1e-27 125.6 92 57.6
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.1e-27 125.6 92 55.4
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 3.9e-26 121.3 77 67.5
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 5.1e-26 120.9 88 56.8
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 5.1e-26 120.9 92 59.8
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 6.7e-26 120.6 82 61.0
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 6.7e-26 120.6 87 57.5
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 6.7e-26 120.6 87 57.5
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 8.7e-26 120.2 77 64.9
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 8.7e-26 120.2 79 64.6
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.5e-25 118.6 77 63.6
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 5.6e-25 117.5 78 61.5
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.4e-25 117.1 87 60.9
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 9.6e-25 116.7 88 54.5
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 9.6e-25 116.7 88 54.5
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 1.3e-24 116.3 77 63.6
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 3.7e-24 114.8 87 54.0
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 3.7e-24 114.8 78 60.3
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 6.2e-24 114.0 128 43.0
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 8.2e-24 113.6 82 54.9
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 4.0e-23 111.3 66 69.7
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 5.3e-23 110.9 120 42.5
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.0e-21 106.7 88 53.4
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.5e-20 102.1 103 47.6
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.3e-18 96.3 81 49.4
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 5.1e-18 94.4 61 62.3
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 3.3e-17 91.7 56 66.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 5.7e-17 90.9 56 64.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.3e-16 89.7 56 64.3
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 2.8e-16 88.6 57 63.2
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 4.8e-16 87.8 56 62.5
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 8.2e-16 87.0 56 64.3
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.0e-14 82.4 56 60.7
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-14 82.0 54 61.1
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-14 82.0 54 61.1
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.6e-14 82.0 54 61.1
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 5.9e-14 80.9 86 41.9
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 4.2e-12 74.7 73 45.2
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 7.2e-12 73.9 87 37.9
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 9.4e-12 73.6 58 51.7
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.8e-10 69.3 81 48.1
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 9.7e-09 63.5 41 65.9
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.3e-08 63.2 41 63.4
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.1e-07 58.5 40 55.0
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.1e-07 58.2 40 60.0


User provided reference genes

Program Settings