Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 1.5e-33 145.6 72 100.0
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 1.8e-18 95.5 72 61.1
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 3.0e-18 94.7 72 59.7
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 6.7e-18 93.6 72 59.7
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 6.3e-16 87.0 72 56.9
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 1.8e-15 85.5 72 59.7
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 1.8e-15 85.5 72 58.3
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 2.4e-15 85.1 70 58.6
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 2.4e-15 85.1 72 56.9
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 2.4e-15 85.1 72 54.2
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 2.4e-15 85.1 72 54.2
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 6.9e-15 83.6 72 55.6
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 6.9e-15 83.6 72 55.6
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 9.0e-15 83.2 72 52.8
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 9.0e-15 83.2 72 55.6
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.2e-14 82.8 65 58.5
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 1.2e-14 82.8 65 58.5
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.2e-14 82.8 72 55.6
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 1.5e-14 82.4 65 53.8
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 1.5e-14 82.4 69 47.8
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 2.0e-14 82.0 72 55.6
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 2.6e-14 81.6 72 52.8
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 2.6e-14 81.6 72 52.8
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 2.6e-14 81.6 69 55.1
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.6e-14 81.6 72 54.2
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 2.6e-14 81.6 72 52.8
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 2.6e-14 81.6 70 51.4
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 2.6e-14 81.6 72 54.2
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 3.4e-14 81.3 72 52.8
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 3.4e-14 81.3 65 55.4
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 3.4e-14 81.3 72 54.2
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 3.4e-14 81.3 72 51.4
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 3.4e-14 81.3 65 53.8
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 3.4e-14 81.3 65 56.9
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 3.4e-14 81.3 72 54.2
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 3.4e-14 81.3 72 55.6
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 4.5e-14 80.9 65 56.9
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 4.5e-14 80.9 65 56.9
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 4.5e-14 80.9 65 56.9
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 4.5e-14 80.9 65 56.9
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 54.2
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 56.9
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 4.5e-14 80.9 72 51.4
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 5.9e-14 80.5 65 52.3
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 5.9e-14 80.5 72 51.4
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 5.9e-14 80.5 65 55.4
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 5.9e-14 80.5 65 56.9
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 5.9e-14 80.5 72 54.2
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 5.9e-14 80.5 65 55.4
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 5.9e-14 80.5 72 54.2
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 55.4
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 53.8
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 53.8
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 53.8
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 52.3
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 52.3
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 51.4
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 52.8
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 52.8
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 52.8
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 52.8
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 52.8
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 7.7e-14 80.1 72 52.8
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 7.7e-14 80.1 65 53.8
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 1.0e-13 79.7 65 52.3
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 1.0e-13 79.7 72 51.4
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 1.0e-13 79.7 72 52.8
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.0e-13 79.7 72 52.8
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.0e-13 79.7 72 50.0
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 1.0e-13 79.7 65 56.9
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 1.0e-13 79.7 72 54.2
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 1.3e-13 79.3 65 52.3
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 1.3e-13 79.3 65 55.4
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 1.3e-13 79.3 65 55.4
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 1.3e-13 79.3 69 53.6
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 51.4
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 1.3e-13 79.3 72 52.8
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 52.3
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 52.3
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 52.3
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 52.3
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 52.3
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 50.0
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 52.3
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 50.0
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 51.4
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 50.0
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 1.7e-13 79.0 69 52.2
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 55.6
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 1.7e-13 79.0 65 49.2
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 50.0
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 50.0
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 50.0
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.7e-13 79.0 72 51.4
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 2.2e-13 78.6 72 51.4
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 2.2e-13 78.6 72 51.4
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 2.2e-13 78.6 71 54.9
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 2.2e-13 78.6 72 50.0
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 2.2e-13 78.6 72 50.0
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 2.2e-13 78.6 69 52.2
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 2.2e-13 78.6 65 53.8
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 2.2e-13 78.6 65 53.8
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 2.9e-13 78.2 65 52.3
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 2.9e-13 78.2 65 52.3
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 2.9e-13 78.2 72 51.4
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 2.9e-13 78.2 72 50.0
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 2.9e-13 78.2 72 45.8
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 2.9e-13 78.2 72 52.8
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 3.8e-13 77.8 72 54.2
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 3.8e-13 77.8 65 55.4
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 3.8e-13 77.8 72 50.0
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 5.0e-13 77.4 74 55.4
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 5.0e-13 77.4 69 50.7
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 5.0e-13 77.4 72 51.4
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 5.0e-13 77.4 72 52.8
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 6.5e-13 77.0 72 48.6
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 6.5e-13 77.0 72 51.4
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 6.5e-13 77.0 72 54.2
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 6.5e-13 77.0 72 54.2
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 6.5e-13 77.0 72 54.2
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 8.5e-13 76.6 65 55.4
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 8.5e-13 76.6 72 48.6
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 8.5e-13 76.6 65 53.8
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 1.4e-12 75.9 69 47.8
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 1.4e-12 75.9 72 48.6
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 1.4e-12 75.9 72 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 1.9e-12 75.5 72 50.0
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.9e-12 75.5 72 51.4
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 3.2e-12 74.7 74 51.4
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.2e-12 74.3 65 49.2
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 4.2e-12 74.3 65 49.2
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 4.2e-12 74.3 72 48.6
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 5.5e-12 73.9 65 49.2
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 5.5e-12 73.9 72 48.6
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 5.5e-12 73.9 69 42.0
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 5.5e-12 73.9 69 46.4
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 7.2e-12 73.6 65 52.3
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.6e-11 72.4 65 47.7
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 6.1e-11 70.5 70 48.6
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 1.8e-10 68.9 65 47.7
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 6.7e-10 67.0 65 41.5
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 1.1e-09 66.2 65 43.1
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 1.5e-09 65.9 65 41.5
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 1.5e-09 65.9 65 41.5
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 8.2e-08 60.1 99 35.4
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 3.1e-07 58.2 53 45.3
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 9.1e-07 56.6 40 67.5
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 1.2e-06 56.2 48 47.9
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 3.4e-06 54.7 48 47.9
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 3.4e-06 54.7 48 50.0
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 5.9e-06 53.9 48 47.9
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 7.7e-06 53.5 34 70.6
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 7.7e-06 53.5 34 70.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 7.7e-06 53.5 29 75.9


User provided reference genes

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