Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 9.9e-142 506.9 280 100.0
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 5.7e-89 331.6 239 70.3
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 8.2e-88 327.8 235 70.2
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 1.1e-87 327.4 214 72.9
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 2.0e-86 323.2 237 67.5
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 2.0e-86 323.2 232 69.0
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 3.4e-86 322.4 219 73.1
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 3.4e-86 322.4 230 70.0
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 1.0e-85 320.9 226 69.9
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 1.7e-85 320.1 226 68.6
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 5.0e-85 318.5 236 67.8
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 5.0e-85 318.5 232 69.0
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 6.5e-85 318.2 227 69.6
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 8.5e-85 317.8 230 69.1
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 8.5e-85 317.8 223 69.5
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 1.1e-84 317.4 236 67.8
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 1.9e-84 316.6 234 67.5
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 1.9e-84 316.6 222 68.5
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 1.9e-84 316.6 236 65.3
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 3.2e-84 315.8 233 66.5
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 3.2e-84 315.8 236 65.3
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 3.2e-84 315.8 234 67.1
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 3.2e-84 315.8 233 70.0
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 3.2e-84 315.8 241 65.1
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 4.2e-84 315.5 236 65.3
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 1.2e-83 313.9 238 66.4
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 1.2e-83 313.9 222 68.5
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 1.6e-83 313.5 237 67.1
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.6e-83 313.5 214 68.2
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.6e-83 313.5 236 66.1
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 1.6e-83 313.5 234 67.1
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.6e-83 313.5 216 70.4
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 1.6e-83 313.5 236 65.3
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 2.1e-83 313.2 224 67.9
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 2.7e-83 312.8 228 68.0
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 3.6e-83 312.4 239 65.3
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 3.6e-83 312.4 231 67.5
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 3.6e-83 312.4 246 66.7
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 3.6e-83 312.4 241 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 4.7e-83 312.0 227 68.3
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 6.1e-83 311.6 228 67.5
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 7.9e-83 311.2 237 65.4
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 7.9e-83 311.2 215 70.2
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 1.0e-82 310.8 243 65.4
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.0e-82 310.8 232 65.9
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.0e-82 310.8 215 69.3
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.4e-82 310.5 239 64.9
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.4e-82 310.5 222 68.5
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.8e-82 310.1 216 69.9
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 1.8e-82 310.1 233 63.9
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 2.3e-82 309.7 236 66.5
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 2.3e-82 309.7 226 66.4
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.0e-82 309.3 236 65.3
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 3.0e-82 309.3 237 65.4
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.9e-82 308.9 236 65.3
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 3.9e-82 308.9 236 65.3
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 3.9e-82 308.9 218 69.3
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 3.9e-82 308.9 199 72.9
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 3.9e-82 308.9 182 78.0
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 3.9e-82 308.9 182 78.0
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 5.1e-82 308.5 235 65.1
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 5.1e-82 308.5 226 65.9
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 5.1e-82 308.5 227 65.6
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 6.7e-82 308.1 222 68.5
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 6.7e-82 308.1 182 78.0
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 6.7e-82 308.1 243 62.6
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 8.8e-82 307.8 226 66.8
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 8.8e-82 307.8 232 65.9
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 8.8e-82 307.8 216 69.0
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 8.8e-82 307.8 232 66.4
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.1e-81 307.4 219 69.4
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.1e-81 307.4 218 68.8
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 1.1e-81 307.4 218 68.8
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 1.1e-81 307.4 218 68.8
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.5e-81 307.0 214 67.3
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 1.5e-81 307.0 228 66.7
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 2.0e-81 306.6 252 62.7
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.6e-81 306.2 218 68.8
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 2.6e-81 306.2 225 68.4
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 3.3e-81 305.8 232 65.5
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 3.3e-81 305.8 227 67.4
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 4.4e-81 305.4 236 64.8
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 5.7e-81 305.1 238 63.0
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 5.7e-81 305.1 238 63.0
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.7e-81 305.1 218 68.8
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 5.7e-81 305.1 184 77.2
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 9.7e-81 304.3 238 63.0
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 9.7e-81 304.3 235 66.0
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 1.3e-80 303.9 183 76.5
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.3e-80 303.9 222 68.0
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 1.3e-80 303.9 218 68.3
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.3e-80 303.9 218 68.3
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.3e-80 303.9 218 68.3
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.3e-80 303.9 218 68.3
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 1.3e-80 303.9 171 80.7
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 1.3e-80 303.9 235 65.1
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 1.7e-80 303.5 215 67.9
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 1.7e-80 303.5 242 63.2
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 1.7e-80 303.5 218 68.8
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 2.8e-80 302.8 219 68.0
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 2.8e-80 302.8 187 74.9
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 3.7e-80 302.4 233 66.5
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 3.7e-80 302.4 171 80.1
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 6.3e-80 301.6 238 62.2
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 6.3e-80 301.6 238 62.2
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 6.3e-80 301.6 171 80.1
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.1e-79 300.8 239 63.2
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 1.4e-79 300.4 180 76.1
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 1.4e-79 300.4 226 65.9
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.4e-79 300.4 174 78.7
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 1.8e-79 300.1 171 78.9
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 1.8e-79 300.1 224 63.8
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 2.4e-79 299.7 259 59.5
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 3.1e-79 299.3 256 60.5
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 3.1e-79 299.3 234 62.8
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 3.1e-79 299.3 226 65.5
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 5.3e-79 298.5 244 61.1
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 7.0e-79 298.1 217 65.4
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 1.2e-78 297.4 216 68.1
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 2.6e-78 296.2 180 75.6
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 2.6e-78 296.2 180 75.6
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 3.5e-78 295.8 241 61.4
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.0e-77 294.3 214 68.2
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.0e-77 294.3 214 68.2
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 2.9e-77 292.7 220 66.4
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 6.5e-77 291.6 217 66.8
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 1.1e-76 290.8 221 66.1
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 2.5e-76 289.7 164 79.3
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 9.4e-76 287.7 240 59.2
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.2e-75 287.3 225 63.1
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 1.6e-75 287.0 182 74.2
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 4.7e-75 285.4 182 74.2
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 6.1e-75 285.0 215 61.4
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 5.7e-73 278.5 173 73.4
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 2.0e-70 270.0 165 75.8
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 2.6e-70 269.6 219 63.5
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.3e-69 267.3 233 60.9
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 8.5e-69 264.6 220 59.5
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 1.0e-66 257.7 158 74.7
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 7.5e-65 251.5 187 64.7
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.5e-60 237.3 147 72.8
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 1.6e-59 233.8 207 58.9
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 8.8e-58 228.0 232 53.0
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 1.5e-57 227.3 227 54.2
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 2.4e-55 219.9 220 52.3
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 5.2e-50 202.2 232 48.7
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 2.0e-49 200.3 172 59.3
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.3e-48 197.6 163 62.0
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.9e-48 196.4 176 54.0
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 4.9e-48 195.7 163 61.3
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 2.4e-47 193.4 182 56.0
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 3.5e-46 189.5 194 49.5
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 3.3e-44 183.0 240 40.8
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 9.8e-41 171.4 131 59.5
Dinv02280 Davidia involucrata HOM05D003624 ORTHO05D004188 1.8e-34 150.6 77 87.0
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 1.6e-30 137.5 109 62.4
CARHR218920 Cardamine hirsuta HOM05D003624 ORTHO05D004188 2.1e-30 137.1 78 78.2
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 2.7e-30 136.7 125 55.2
RcHm_v2.0_Chr2g0124991 Rosa chinensis HOM05D003624 ORTHO05D004188 3.0e-29 133.3 66 87.9
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.8e-26 124.0 183 42.1
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 3.5e-22 109.8 129 49.6
TAR625G1177 Trochodendron aralioides HOM05D003624 ORTHO05D004188 1.5e-12 77.8 85 52.9
EL10Ac6g13457 Beta vulgaris HOM05D003624 ORTHO05D089579 1.9e-07 60.8 109 35.8
Aqoxy2G00783 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 6.0e-06 55.8 67 40.3


User provided reference genes

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