Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 4.9e-165 584.3 282 100.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.7e-83 312.0 289 56.1
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.1e-79 300.8 277 55.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-76 288.9 276 51.1
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.2e-76 288.9 276 51.1
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-75 287.3 276 51.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-74 283.9 269 51.7
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.8e-74 281.6 276 51.1
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.2e-73 280.8 266 54.9
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 7.0e-71 271.6 273 53.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.0e-70 270.0 270 50.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.7e-70 269.6 270 50.4
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.7e-70 269.6 273 50.5
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-70 269.2 276 49.6
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 4.6e-70 268.9 270 50.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 3.9e-69 265.8 270 50.7
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.6e-69 265.0 270 50.0
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 6.6e-69 265.0 270 50.7
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 8.6e-69 264.6 271 51.3
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 1.1e-68 264.2 270 49.3
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.5e-68 263.1 270 49.3
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.5e-68 263.1 270 51.9
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 2.5e-68 263.1 270 49.3
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 3.3e-68 262.7 271 49.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.3e-68 262.7 270 50.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.3e-68 262.3 270 51.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.3e-68 262.3 270 49.6
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.3e-68 262.3 270 49.6
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 5.6e-68 261.9 270 50.7
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 9.5e-68 261.2 274 49.6
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 9.5e-68 261.2 270 49.6
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.5e-68 261.2 262 49.6
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.2e-67 260.8 273 49.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.2e-67 260.8 270 49.6
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.2e-67 260.8 270 49.6
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.6e-67 260.4 270 49.3
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.1e-67 260.0 270 48.9
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.6e-67 259.2 270 50.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.6e-67 259.2 270 48.5
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.6e-67 259.2 270 50.7
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 4.7e-67 258.8 270 50.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 4.7e-67 258.8 270 50.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.2e-67 258.5 270 49.3
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 6.2e-67 258.5 270 50.4
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 6.2e-67 258.5 270 50.4
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 8.0e-67 258.1 270 50.7
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 8.0e-67 258.1 274 49.6
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 8.0e-67 258.1 266 48.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.0e-66 257.7 273 48.4
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.4e-66 257.3 273 48.0
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.4e-66 257.3 270 50.7
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 2.3e-66 256.5 270 48.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.1e-66 256.1 270 48.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 5.2e-66 255.4 270 49.3
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 6.8e-66 255.0 270 49.3
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 6.8e-66 255.0 270 49.6
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 8.9e-66 254.6 270 49.3
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.2e-65 254.2 270 48.1
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.2e-65 254.2 274 51.1
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-65 254.2 270 50.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.2e-65 254.2 270 50.4
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.5e-65 253.8 269 48.3
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 2.0e-65 253.4 277 46.6
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.4e-65 252.7 282 48.9
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.4e-65 252.7 270 49.6
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 5.8e-65 251.9 270 49.3
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 5.8e-65 251.9 270 46.7
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 7.5e-65 251.5 270 47.4
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 9.8e-65 251.1 270 46.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 9.8e-65 251.1 270 48.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.3e-64 250.8 270 46.7
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.3e-64 250.8 265 49.1
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 2.2e-64 250.0 268 49.3
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 3.7e-64 249.2 270 48.1
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 3.7e-64 249.2 270 48.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.7e-64 249.2 270 48.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 4.9e-64 248.8 270 47.8
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 6.4e-64 248.4 273 46.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.1e-63 247.7 270 46.7
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.4e-63 247.3 270 47.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.2e-63 246.1 270 45.9
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.1e-63 245.7 270 47.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 5.4e-63 245.4 270 46.7
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.2e-63 244.6 270 47.0
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.2e-63 244.6 270 47.0
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 9.2e-63 244.6 275 45.5
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.2e-62 244.2 270 47.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.5e-62 242.7 270 45.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.0e-61 241.1 270 45.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.7e-61 240.4 270 45.2
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 3.9e-61 239.2 270 45.9
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 5.0e-61 238.8 281 45.6
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 6.6e-61 238.4 270 45.9
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.1e-60 237.7 270 45.9
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.1e-60 237.7 270 46.3
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.9e-60 236.9 270 45.9
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.5e-60 236.5 270 45.6
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 4.3e-60 235.7 274 42.3
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 9.5e-60 234.6 270 45.6
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 9.5e-60 234.6 270 45.9
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 9.5e-60 234.6 270 45.9
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 5.4e-55 218.8 246 47.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.0e-53 214.5 271 45.0
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 4.3e-52 209.1 267 43.8
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-50 204.5 246 43.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.7e-48 197.2 262 42.7
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-48 195.3 215 46.0
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 8.4e-48 194.9 257 42.4
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.1e-47 191.8 270 43.3
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 8.6e-45 184.9 212 46.7
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.0e-41 173.7 266 38.7
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-40 169.5 162 51.2
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 6.9e-34 148.7 104 64.4
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 2.2e-32 143.7 273 32.6
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.8e-32 142.9 273 35.2
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 3.8e-32 142.9 189 41.8
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.2e-31 139.8 109 59.6
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.7e-29 131.7 79 70.9
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.7e-29 131.7 79 70.9
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 4.0e-26 122.9 94 57.4
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-24 117.1 193 39.4
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.2e-24 117.1 193 39.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-23 114.8 139 43.9
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.2e-22 111.3 79 60.8
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.5e-20 104.4 79 58.2
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.8e-18 97.4 87 50.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.1e-18 96.7 73 56.2
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.2e-15 86.3 78 48.7
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 5.1e-13 79.3 70 50.0
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-08 63.2 39 66.7
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 8.4e-08 62.0 75 40.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-06 57.0 42 57.1
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 4.6e-06 56.2 57 43.9


User provided reference genes

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