Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g38216 Chara braunii HOM05D003321 ORTHO05D013943 1.3e-31 139.0 67 100.0
CBR_g45660 Chara braunii HOM05D003321 ORTHO05D013943 1.2e-13 79.3 57 63.2
Carub.0005s0728 Capsella rubella HOM05D003321 ORTHO05D005161 1.8e-12 75.5 61 52.5
CARHR151710 Cardamine hirsuta HOM05D003321 ORTHO05D005161 1.8e-12 75.5 61 52.5
Pp3c14_18840 Physcomitrium patens HOM05D003321 ORTHO05D013943 1.8e-12 75.5 57 57.9
Thhalv10003803m.g Eutrema salsugineum HOM05D003321 ORTHO05D005161 3.0e-12 74.7 61 52.5
AL5G18450 Arabidopsis lyrata HOM05D003321 ORTHO05D005161 3.9e-12 74.3 61 50.8
AT3G28730 Arabidopsis thaliana HOM05D003321 ORTHO05D005161 6.7e-12 73.6 61 50.8
Sp2g17380 Schrenkiella parvula HOM05D003321 ORTHO05D005161 6.7e-12 73.6 61 50.8
HanXRQChr16g0519581 Helianthus annuus HOM05D003321 ORTHO05D005161 1.1e-11 72.8 66 48.5
Aa31LG2G4470 Aethionema arabicum HOM05D003321 ORTHO05D005161 1.5e-11 72.4 61 49.2
THA.LOC104805449 Tarenaya hassleriana HOM05D003321 ORTHO05D005161 1.9e-11 72.0 61 49.2
BcaC03g17525 Brassica carinata HOM05D003321 ORTHO05D005161 2.5e-11 71.6 61 50.8
ClCG10G014840 Citrullus lanatus HOM05D003321 ORTHO05D005161 3.3e-11 71.2 61 49.2
MELO3C009890.2 Cucumis melo HOM05D003321 ORTHO05D005161 3.3e-11 71.2 61 49.2
CsaV3_3G041690 Cucumis sativus L. HOM05D003321 ORTHO05D005161 3.3e-11 71.2 61 49.2
Medtr1g022345 Medicago truncatula HOM05D003321 ORTHO05D005161 3.3e-11 71.2 60 48.3
SalBow1G0468 Salvia bowleyana HOM05D003321 ORTHO05D005161 3.3e-11 71.2 60 51.7
Hund09520 Selenicereus undatus HOM05D003321 ORTHO05D005161 5.6e-11 70.5 61 54.1
A02p36020 Brassica napus HOM05D003321 ORTHO05D005161 7.4e-11 70.1 61 49.2
C02p54860 Brassica napus HOM05D003321 ORTHO05D005161 7.4e-11 70.1 61 49.2
BolC2t11547H Brassica oleracea HOM05D003321 ORTHO05D005161 7.4e-11 70.1 61 49.2
BraA02t08601Z Brassica rapa HOM05D003321 ORTHO05D005161 7.4e-11 70.1 61 49.2
Cre01.g029450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D005161 7.4e-11 70.1 65 47.7
Mapoly0031s0059 Marchantia polymorpha HOM05D003321 ORTHO05D013943 7.4e-11 70.1 60 50.0
Hund02846 Selenicereus undatus HOM05D003321 ORTHO05D005161 7.4e-11 70.1 65 49.2
AagrBONN_evm.TU.Sc2ySwM_368.3353 Anthoceros agrestis HOM05D003321 ORTHO05D013943 9.6e-11 69.7 51 52.9
BcaB07g30122 Brassica carinata HOM05D003321 ORTHO05D005161 9.6e-11 69.7 61 49.2
Lju41A25T61 Lonicera japonica HOM05D003321 ORTHO05D005161 9.6e-11 69.7 61 47.5
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 9.6e-11 69.7 61 49.2
AagrBONN_evm.TU.Sc2ySwM_362.1279 Anthoceros agrestis HOM05D003321 ORTHO05D005161 1.3e-10 69.3 61 50.8
ECA234G3709 Erigeron canadensis HOM05D003321 ORTHO05D005161 1.3e-10 69.3 63 46.0
Lsat_1_v5_gn_4_46121 Lactuca sativa HOM05D003321 ORTHO05D005161 1.6e-10 68.9 63 49.2
Phvul.004G026200 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 1.6e-10 68.9 61 47.5
AagrBONN_evm.TU.Sc2ySwM_362.952 Anthoceros agrestis HOM05D003321 ORTHO05D013943 2.1e-10 68.6 52 53.8
CANSAT64G1196 Cannabis sativa HOM05D003321 ORTHO05D005161 2.1e-10 68.6 61 49.2
MD09G1047500 Malus domestica HOM05D003321 ORTHO05D005161 2.1e-10 68.6 61 47.5
Phvul.011G212400 Phaseolus vulgaris HOM05D003321 ORTHO05D005161 2.1e-10 68.6 61 47.5
A06p40380 Brassica napus HOM05D003321 ORTHO05D005161 2.8e-10 68.2 61 45.9
BraA06t26956Z Brassica rapa HOM05D003321 ORTHO05D005161 2.8e-10 68.2 61 45.9
Cre06.g261450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D000541 2.8e-10 68.2 60 50.0
Manes.15G172400 Manihot esculenta HOM05D003321 ORTHO05D005161 2.8e-10 68.2 61 47.5
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 2.8e-10 68.2 61 45.9
VMungo0464G0737 Vigna mungo HOM05D003321 ORTHO05D005161 2.8e-10 68.2 61 47.5
CBR_g20179 Chara braunii HOM05D003321 ORTHO05D005161 3.7e-10 67.8 64 45.3
Manes.15G176600 Manihot esculenta HOM05D003321 ORTHO05D005161 3.7e-10 67.8 61 47.5
Ca_13366_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 4.8e-10 67.4 61 45.9
Glyma.03G031900 Glycine max HOM05D003321 ORTHO05D005161 4.8e-10 67.4 61 45.9
VMungo1127G1679 Vigna mungo HOM05D003321 ORTHO05D005161 4.8e-10 67.4 61 45.9
Cc07_g03050 Coffea canephora HOM05D003321 ORTHO05D005161 6.2e-10 67.0 61 49.2
arahy.Tifrunner.gnm1.ann1.T0AAPV Arachis hypogaea HOM05D003321 ORTHO05D005161 8.2e-10 66.6 61 45.9
Dinv33721 Davidia involucrata HOM05D003321 ORTHO05D005161 8.2e-10 66.6 61 44.3
QL02p080714 Quercus lobata HOM05D003321 ORTHO05D005161 8.2e-10 66.6 61 45.9
Actinidia06077 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.4e-09 65.9 61 42.6
Actinidia23569 Actinidia chinensis HOM05D003321 ORTHO05D005161 1.4e-09 65.9 61 42.6
Haze_14579 Corylus avellana HOM05D003321 ORTHO05D005161 1.4e-09 65.9 61 44.3
DCAR_011159 Daucus carota HOM05D003321 ORTHO05D005161 1.4e-09 65.9 60 48.3
GSVIVG01011349001 Vitis vinifera HOM05D003321 ORTHO05D005161 1.4e-09 65.9 61 44.3
BcaC06g30900 Brassica carinata HOM05D003321 ORTHO05D005161 1.8e-09 65.5 61 44.3
Lj2g0002473 Lotus japonicus HOM05D003321 ORTHO05D005161 1.8e-09 65.5 61 45.9
Oeu037176.3 Olea europaea HOM05D003321 ORTHO05D005161 1.8e-09 65.5 61 45.9
unitig_899.g15507 Utricularia gibba HOM05D003321 ORTHO05D005161 1.8e-09 65.5 61 45.9
BcaC06g33636 Brassica carinata HOM05D003321 ORTHO05D005161 2.4e-09 65.1 61 44.3
C07p37670 Brassica napus HOM05D003321 ORTHO05D005161 2.4e-09 65.1 61 44.3
BolC7t44284H Brassica oleracea HOM05D003321 ORTHO05D005161 2.4e-09 65.1 61 44.3
CANSAT01G0550 Cannabis sativa HOM05D000235 ORTHO05D000147 2.4e-09 65.1 61 45.9
Migut.K01331 Erythranthe guttata HOM05D003321 ORTHO05D005161 2.4e-09 65.1 61 44.3
Glyma.01G136100 Glycine max HOM05D003321 ORTHO05D005161 2.4e-09 65.1 61 44.3
Thecc.04G075500 Theobroma cacao HOM05D003321 ORTHO05D005161 2.4e-09 65.1 61 47.5
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 3.1e-09 64.7 64 48.4
HanXRQChr02g0056421 Helianthus annuus HOM05D003321 ORTHO05D005161 3.1e-09 64.7 61 44.3
Psat2g033240 Pisum sativum HOM05D003321 ORTHO05D005161 3.1e-09 64.7 61 45.9
RcHm_v2.0_Chr2g0169081 Rosa chinensis HOM05D003321 ORTHO05D005161 3.1e-09 64.7 60 45.0
SGA_v2.0_scaffold205G41764 Striga asiatica HOM05D003321 ORTHO05D005161 3.1e-09 64.7 60 45.0
Peaxi162Scf00129g00539 Petunia axillaris HOM05D003321 ORTHO05D005161 5.3e-09 63.9 61 42.6
Prupe.3G271500 Prunus persica HOM05D003321 ORTHO05D005161 5.3e-09 63.9 61 44.3
Ah.11g050340 Amaranthus hybridus HOM05D003321 ORTHO05D005161 6.9e-09 63.5 61 47.5
CAN.G206.123 Capsicum annuum HOM05D003321 ORTHO05D005161 6.9e-09 63.5 61 42.6
Ca_05956_v3 Cicer arietinum L. HOM05D003321 ORTHO05D005161 6.9e-09 63.5 61 44.3
Ciclev10011266m.g Citrus clementina HOM05D003321 ORTHO05D005161 6.9e-09 63.5 61 41.0
FAN09G2289 Fragaria x ananassa HOM05D003321 ORTHO05D005161 6.9e-09 63.5 60 45.0
Glyma.13G064800 Glycine max HOM05D003321 ORTHO05D005161 6.9e-09 63.5 58 46.6
Lj7A400T32 Lonicera japonica HOM05D003321 ORTHO05D005161 6.9e-09 63.5 61 42.6
RhsimUnG0055900 Rhododendron simsii HOM05D003321 ORTHO05D005161 6.9e-09 63.5 61 42.6
CiPaw.04G019600 Carya illinoinensis HOM05D003321 ORTHO05D005161 9.0e-09 63.2 61 45.9
FvH4_6g49210 Fragaria vesca HOM05D003321 ORTHO05D005161 9.0e-09 63.2 60 45.0
FAN02G3930 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.0e-09 63.2 60 45.0
FAN09G2305 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.0e-09 63.2 60 45.0
FAN14G0823 Fragaria x ananassa HOM05D003321 ORTHO05D005161 9.0e-09 63.2 60 45.0
Lalb_Chr06g0175461 Lupinus albus HOM05D003321 ORTHO05D005161 9.0e-09 63.2 60 45.0
CSS0001778 Camellia sinensis var. sinensis HOM05D003321 ORTHO05D005161 1.2e-08 62.8 61 39.3
FAN14G5472 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.2e-08 62.8 60 45.0
TPR.G38431 Trifolium pratense HOM05D003321 ORTHO05D005161 1.2e-08 62.8 61 44.3
AUR62011989 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.5e-08 62.4 56 48.2
AUR62032308 Chenopodium quinoa HOM05D003321 ORTHO05D005161 1.5e-08 62.4 56 48.2
COL.COLO4_25165 Corchorus olitorius HOM05D003321 ORTHO05D005161 1.5e-08 62.4 61 44.3
FAN05G4145 Fragaria x ananassa HOM05D003321 ORTHO05D005161 1.5e-08 62.4 60 45.0
Lalb_Chr02g0159551 Lupinus albus HOM05D003321 ORTHO05D005161 1.5e-08 62.4 60 43.3
Medtr5g082570 Medicago truncatula HOM05D003321 ORTHO05D005161 1.5e-08 62.4 63 44.4
Nitab4.5_0009739g0020 Nicotiana tabacum HOM05D003321 ORTHO05D005161 1.5e-08 62.4 61 42.6
Lj2g0024928 Lotus japonicus HOM05D003321 ORTHO05D005161 2.0e-08 62.0 61 41.0
Nitab4.5_0003314g0110 Nicotiana tabacum HOM05D003321 ORTHO05D005161 2.0e-08 62.0 61 42.6
SMO139G0055 Selaginella moellendorffii HOM05D003321 ORTHO05D013943 3.4e-08 61.2 53 47.2
Aqoxy7G00145 Aquilegia oxysepala HOM05D004154 ORTHO05D004988 4.5e-08 60.8 53 49.1
CiPaw.03G029600 Carya illinoinensis HOM05D003321 ORTHO05D005161 4.5e-08 60.8 61 42.6
Gohir.D09G021100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 4.5e-08 60.8 61 45.9
Gorai.006G024900 Gossypium raimondii HOM05D003321 ORTHO05D005161 4.5e-08 60.8 61 45.9
Gohir.A09G021800 Gossypium hirsutum HOM05D003321 ORTHO05D005161 5.8e-08 60.5 61 44.3
Hma1.2p1_0247F.1_g101800 Hydrangea macrophylla HOM05D003321 ORTHO05D005161 5.8e-08 60.5 56 42.9
Sed0022026 Sechium edule HOM05D003321 ORTHO05D005161 5.8e-08 60.5 61 42.6
Solyc02g087710.3 Solanum lycopersicum HOM05D003321 ORTHO05D005161 5.8e-08 60.5 61 37.7
Sopen02g032440 Solanum pennellii HOM05D003321 ORTHO05D005161 5.8e-08 60.5 61 37.7
PGSC0003DMG400001414 Solanum tuberosum HOM05D003321 ORTHO05D005161 5.8e-08 60.5 61 37.7
Atru.chr8.1903 Acer truncatum HOM05D003321 ORTHO05D005161 7.6e-08 60.1 71 39.4
EL10Ac5g10521 Beta vulgaris HOM05D003321 ORTHO05D005161 7.6e-08 60.1 61 44.3
Duzib264G0140 Durio zibethinus HOM05D003321 ORTHO05D005161 7.6e-08 60.1 60 43.3
ECA238G2291 Erigeron canadensis HOM05D003321 ORTHO05D005161 7.6e-08 60.1 61 42.6
PGR142G0788 Punica granatum HOM05D003321 ORTHO05D005161 7.6e-08 60.1 61 42.6
PGSC0003DMG400018099 Solanum tuberosum HOM05D003321 ORTHO05D005161 7.6e-08 60.1 61 37.7
Cre11.g481050 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D004988 1.0e-07 59.7 60 40.0
Zm00001eb337810 Zea mays HOM05D003321 ORTHO05D005161 1.0e-07 59.7 65 44.6
Duzib147G1608 Durio zibethinus HOM05D003321 ORTHO05D005161 1.7e-07 58.9 61 44.3
Aqoxy3G03281 Aquilegia oxysepala HOM05D003321 ORTHO05D005161 2.2e-07 58.5 61 39.3
MCO04G043 Micromonas commoda HOM05D000827 ORTHO05D001576 2.2e-07 58.5 62 45.2
CDE05G1579 Ceratophyllum demersum HOM05D003321 ORTHO05D013943 2.9e-07 58.2 61 41.0
CDE05G0865 Ceratophyllum demersum HOM05D003321 ORTHO05D005161 3.8e-07 57.8 61 41.0
Migut.H00892 Erythranthe guttata HOM05D003321 ORTHO05D005161 3.8e-07 57.8 61 41.0
Gohir.A11G069100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 3.8e-07 57.8 55 47.3
Os05g0182600 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 3.8e-07 57.8 60 41.7
Actinidia36023 Actinidia chinensis HOM05D003321 ORTHO05D013943 4.9e-07 57.4 51 43.1
Gohir.D11G073100 Gossypium hirsutum HOM05D003321 ORTHO05D005161 4.9e-07 57.4 55 47.3
Gorai.007G078500 Gossypium raimondii HOM05D003321 ORTHO05D005161 4.9e-07 57.4 55 47.3
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 4.9e-07 57.4 61 42.6
ATR1120G139 Amborella trichopoda HOM05D003321 ORTHO05D005161 6.5e-07 57.0 61 39.3
Haze_26494 Corylus avellana HOM05D003321 ORTHO05D000541 6.5e-07 57.0 63 46.0
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 6.5e-07 57.0 53 49.1
PSO135G0371 Papaver somniferum HOM05D004154 ORTHO05D004988 6.5e-07 57.0 53 47.2
PSO384G3063 Papaver somniferum HOM05D004154 ORTHO05D004988 6.5e-07 57.0 53 47.2
Zm00001eb282920 Zea mays HOM05D003321 ORTHO05D005161 6.5e-07 57.0 60 40.0
BolC2t11554H Brassica oleracea HOM05D003321 ORTHO05D013943 8.4e-07 56.6 50 48.0
Eucgr.I01920 Eucalyptus grandis HOM05D003321 ORTHO05D005161 8.4e-07 56.6 60 38.3
TPR.G20170 Trifolium pratense HOM05D003321 ORTHO05D005161 8.4e-07 56.6 86 33.7
TWI34G1126 Tripterygium wilfordii HOM05D003321 ORTHO05D005161 8.4e-07 56.6 60 43.3
HPP92_017969 Vanilla planifolia HOM05D003321 ORTHO05D005161 8.4e-07 56.6 61 41.0
MBI17_g17503_MAGBIO Magnolia biondii HOM05D003321 ORTHO05D005161 1.1e-06 56.2 72 38.9
Nn4g23059 Nelumbo nucifera HOM05D003321 ORTHO05D005161 1.1e-06 56.2 59 40.7
ATR0594G018 Amborella trichopoda HOM05D004154 ORTHO05D004988 1.4e-06 55.8 53 43.4
Lsat_1_v5_gn_2_88641 Lactuca sativa HOM05D003321 ORTHO05D005161 1.4e-06 55.8 61 41.0
Cre11.g480950 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D013943 2.5e-06 55.1 61 39.3
Haze_27500 Corylus avellana HOM05D003321 ORTHO05D000541 2.5e-06 55.1 67 43.3
Os01g0184900 Oryza sativa ssp. japonica HOM05D003321 ORTHO05D005161 2.5e-06 55.1 60 41.7
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 3.2e-06 54.7 63 42.9
Nn3g19070 Nelumbo nucifera HOM05D004154 ORTHO05D004988 5.5e-06 53.9 53 43.4
Nitab4.5_0000564g0350 Nicotiana tabacum HOM05D003321 ORTHO05D005161 5.5e-06 53.9 61 39.3
MSTRG.3218 Avicennia marina HOM05D003321 ORTHO05D005161 7.1e-06 53.5 61 37.7
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 7.1e-06 53.5 58 41.4
Mapoly0030s0009 Marchantia polymorpha HOM05D003321 ORTHO05D005161 7.1e-06 53.5 65 38.5
Mapoly0026s0138 Marchantia polymorpha HOM05D004154 ORTHO05D004988 9.3e-06 53.1 53 39.6
Hund11402 Selenicereus undatus HOM05D004154 ORTHO05D004988 9.3e-06 53.1 61 39.3


User provided reference genes

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