Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 3.7e-157 558.1 280 100.0
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 5.5e-84 315.1 290 54.8
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.3e-80 303.9 283 54.8
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.2e-78 297.4 287 53.7
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.6e-78 296.2 281 54.8
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.6e-78 296.2 287 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 4.5e-78 295.4 286 53.8
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 4.5e-78 295.4 285 54.0
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.1e-76 290.8 291 53.3
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 4.2e-76 288.9 285 53.3
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 7.2e-76 288.1 285 53.7
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.6e-75 287.0 291 51.9
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.7e-75 286.2 291 51.5
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.6e-75 285.8 289 51.9
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 4.7e-75 285.4 281 53.4
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 8.0e-75 284.6 285 53.0
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.0e-74 284.3 291 52.2
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.4e-74 283.9 285 52.3
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.8e-74 283.5 291 51.9
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 2.3e-74 283.1 291 51.5
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 3.0e-74 282.7 287 52.3
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.0e-74 282.7 291 51.5
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 3.9e-74 282.3 285 51.9
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 3.9e-74 282.3 285 51.9
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 6.7e-74 281.6 284 52.5
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 6.7e-74 281.6 279 53.0
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 6.7e-74 281.6 291 51.9
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 6.7e-74 281.6 291 51.9
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 8.8e-74 281.2 285 51.9
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 8.8e-74 281.2 291 50.9
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 2.0e-73 280.0 303 50.5
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.0e-73 280.0 285 51.6
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.0e-73 280.0 285 51.9
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 2.0e-73 280.0 290 51.0
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 2.6e-73 279.6 285 51.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 2.6e-73 279.6 281 52.3
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 3.3e-73 279.3 290 50.3
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.3e-73 279.3 285 52.3
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 4.4e-73 278.9 290 50.7
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 4.4e-73 278.9 285 51.9
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 5.7e-73 278.5 297 50.8
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 7.4e-73 278.1 285 51.9
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 7.4e-73 278.1 289 50.9
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 7.4e-73 278.1 285 51.6
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.4e-73 278.1 289 50.2
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 9.7e-73 277.7 290 51.4
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 9.7e-73 277.7 285 51.6
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.2e-72 276.6 290 51.7
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 2.2e-72 276.6 285 51.6
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 2.8e-72 276.2 285 51.6
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 2.8e-72 276.2 285 50.2
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.7e-72 275.8 285 51.6
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 6.3e-72 275.0 285 51.6
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.1e-71 274.2 289 49.5
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 1.4e-71 273.9 286 51.4
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.8e-71 273.5 289 49.5
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 1.8e-71 273.5 290 51.0
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.4e-71 273.1 292 49.0
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.4e-71 273.1 289 49.5
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 3.1e-71 272.7 285 50.2
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 4.1e-71 272.3 285 50.5
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 5.3e-71 271.9 285 51.6
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 5.3e-71 271.9 289 49.5
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 7.0e-71 271.6 292 48.6
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 7.0e-71 271.6 289 50.2
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 7.0e-71 271.6 290 49.7
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 9.1e-71 271.2 285 49.8
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.2e-70 270.8 285 50.9
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.6e-70 270.4 287 49.1
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.6e-70 270.4 289 48.4
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.6e-70 270.4 285 49.8
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.6e-70 270.4 290 49.3
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.6e-70 270.4 289 49.8
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.0e-70 270.0 289 48.1
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 2.0e-70 270.0 289 48.1
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.0e-70 270.0 289 48.1
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.0e-70 270.0 289 48.1
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 2.0e-70 270.0 289 48.1
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.0e-70 270.0 287 48.4
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.6e-70 269.6 292 48.3
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.6e-70 269.6 289 49.1
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 2.6e-70 269.6 285 49.8
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.6e-70 269.6 289 48.4
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 3.5e-70 269.2 290 49.3
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.5e-70 269.2 287 48.4
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 3.5e-70 269.2 286 50.7
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 5.9e-70 268.5 285 49.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 7.7e-70 268.1 289 47.8
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 7.7e-70 268.1 285 49.8
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.7e-70 268.1 290 48.6
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.7e-69 266.9 285 49.1
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.7e-69 266.9 285 48.8
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.7e-69 266.9 271 50.6
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.2e-69 266.5 287 48.4
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.2e-69 266.5 293 48.8
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 2.2e-69 266.5 285 49.1
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 2.2e-69 266.5 289 49.5
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 2.2e-69 266.5 325 46.2
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 5.0e-69 265.4 285 48.8
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 5.0e-69 265.4 290 49.7
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 6.5e-69 265.0 287 48.4
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 8.5e-69 264.6 281 49.8
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 8.5e-69 264.6 288 50.0
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-68 264.2 285 48.4
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.5e-68 263.8 287 47.7
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.5e-68 263.8 283 49.1
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.9e-68 263.5 287 48.1
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.9e-68 263.5 289 48.4
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.5e-68 263.1 288 49.7
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.2e-68 262.7 289 47.8
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 3.2e-68 262.7 285 48.4
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 5.5e-68 261.9 284 48.6
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 7.2e-68 261.5 287 47.4
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 7.2e-68 261.5 287 47.4
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 7.2e-68 261.5 285 48.1
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 7.2e-68 261.5 283 48.8
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 9.4e-68 261.2 269 52.4
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 9.4e-68 261.2 288 49.7
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 1.2e-67 260.8 281 49.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.6e-67 260.4 287 47.4
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.6e-67 260.4 287 47.0
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.6e-67 260.4 301 48.8
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 2.1e-67 260.0 289 47.1
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 2.7e-67 259.6 289 48.1
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 2.7e-67 259.6 287 47.0
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.8e-66 256.9 291 47.8
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.3e-66 256.5 291 47.8
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.0e-66 256.1 291 47.8
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 3.0e-66 256.1 285 47.0
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.5e-65 253.8 285 48.4
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.6e-65 253.1 285 47.0
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.6e-65 253.1 287 46.3
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 9.8e-65 251.1 257 52.1
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 9.8e-65 251.1 252 52.0
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 4.8e-64 248.8 304 45.4
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 6.3e-64 248.4 304 47.0
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 8.3e-64 248.1 303 46.5
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 1.8e-63 246.9 286 49.0
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 7.0e-63 245.0 290 46.9
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 1.2e-62 244.2 286 45.8
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 3.5e-62 242.7 283 46.6
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.6e-59 232.6 234 52.6
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 4.7e-59 232.3 287 44.6
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 6.1e-59 231.9 228 53.5
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.4e-58 230.7 287 45.6
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 2.2e-56 223.4 249 48.2
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.4e-55 219.9 443 34.5
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.7e-54 216.5 228 50.0
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.0e-53 214.5 309 41.4
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 7.5e-49 198.4 195 52.3
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.2e-46 191.0 293 40.6
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 3.9e-45 186.0 152 59.2
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 3.9e-37 159.5 113 68.1
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 7.5e-33 145.2 257 35.4
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.3e-32 144.4 149 51.7
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.9e-32 143.3 160 49.4
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 5.6e-20 102.4 131 42.0
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 9.3e-15 85.1 66 62.1
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 7.8e-14 82.0 74 58.1
Cfa026260 Carpinus fangiana HOM05D004135 ORTHO05D125562 2.3e-13 80.5 199 30.2
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.8e-10 70.9 63 57.1
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 3.4e-09 66.6 55 60.0
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 3.2e-07 60.1 50 60.0
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 1.2e-06 58.2 56 53.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.2e-06 58.2 55 54.5
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.1e-06 57.4 50 58.0


User provided reference genes

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