Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 7.5e-45 183.3 84 100.0
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.3e-22 108.6 82 58.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.2e-21 106.3 115 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.5e-21 105.9 113 46.9
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 3.4e-21 104.8 112 46.4
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.2e-19 98.2 113 42.5
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 7.1e-19 97.1 112 42.9
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 2.5e-16 88.6 113 40.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 8.1e-15 83.6 117 41.0
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.1e-14 83.2 117 41.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 4.0e-14 81.3 117 40.2
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 4.0e-14 81.3 112 40.2
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 4.0e-14 81.3 117 39.3
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.9e-14 80.1 110 40.9
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.9e-14 80.1 110 40.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.2e-13 79.7 110 40.9
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 2.0e-13 79.0 117 36.8
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.4e-13 78.2 117 36.8
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 7.6e-13 77.0 123 35.0
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.9e-13 76.6 117 36.8
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.3e-12 76.3 117 35.9
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 2.2e-12 75.5 118 38.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.9e-12 75.1 117 36.8
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 3.8e-12 74.7 117 35.9
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 4.9e-12 74.3 118 38.1
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 6.4e-12 73.9 117 35.0
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 8.4e-12 73.6 118 32.2
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 8.4e-12 73.6 118 32.2
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 8.4e-12 73.6 118 32.2
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 8.4e-12 73.6 118 32.2
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 8.4e-12 73.6 111 36.0
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.1e-11 73.2 117 34.2
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.1e-11 73.2 128 35.2
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.4e-11 72.8 128 33.6
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.4e-11 72.8 125 35.2
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.4e-11 72.8 117 35.9
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.4e-11 72.8 111 35.1
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.9e-11 72.4 82 39.0
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 1.9e-11 72.4 125 35.2
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.9e-11 72.4 125 35.2
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 1.9e-11 72.4 125 35.2
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.9e-11 72.4 117 36.8
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-11 72.0 118 32.2
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 2.4e-11 72.0 118 32.2
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 2.4e-11 72.0 118 35.6
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 2.4e-11 72.0 117 35.0
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 2.4e-11 72.0 111 36.9
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 4.1e-11 71.2 117 36.8
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 5.4e-11 70.9 116 31.9
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 5.4e-11 70.9 117 34.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 5.4e-11 70.9 111 36.9
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 7.1e-11 70.5 119 32.8
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 7.1e-11 70.5 98 38.8
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.2e-10 69.7 125 34.4
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 1.6e-10 69.3 125 32.0
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.6e-10 69.3 118 33.1
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.6e-10 69.3 124 33.1
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.1e-10 68.9 44 59.1
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.1e-10 68.9 44 59.1
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 2.1e-10 68.9 119 31.9
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.1e-10 68.9 123 32.5
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 2.7e-10 68.6 119 36.1
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.7e-10 68.6 117 35.9
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 3.5e-10 68.2 119 33.6
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 3.5e-10 68.2 117 32.5
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 3.5e-10 68.2 123 31.7
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 6.0e-10 67.4 117 31.6
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 6.0e-10 67.4 117 31.6
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 7.8e-10 67.0 124 30.6
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.7e-09 65.9 46 54.3
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 3.0e-09 65.1 128 32.0
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 3.0e-09 65.1 123 32.5
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 3.0e-09 65.1 44 54.5
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 3.9e-09 64.7 125 31.2
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 5.1e-09 64.3 127 32.3
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 5.1e-09 64.3 45 53.3
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.1e-09 64.3 45 53.3
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 5.1e-09 64.3 45 53.3
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 6.6e-09 63.9 119 31.1
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 6.6e-09 63.9 44 52.3
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 6.6e-09 63.9 44 54.5
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.6e-09 63.9 44 54.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 8.7e-09 63.5 125 31.2
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 8.7e-09 63.5 45 55.6
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 8.7e-09 63.5 44 54.5
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.1e-08 63.2 45 48.9
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.5e-08 62.8 44 52.3
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.5e-08 62.8 44 52.3
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 1.9e-08 62.4 44 59.1
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 1.9e-08 62.4 133 30.1
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 2.5e-08 62.0 123 32.5
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 3.3e-08 61.6 44 54.5
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.3e-08 61.6 44 54.5
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 3.3e-08 61.6 135 28.9
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 4.3e-08 61.2 124 29.0
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 5.6e-08 60.8 45 53.3
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.6e-08 60.1 44 50.0
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.6e-08 60.1 44 50.0
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.8e-07 58.5 46 50.0
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 2.8e-07 58.5 153 28.1
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 3.6e-07 58.2 118 31.4
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 3.6e-07 58.2 42 59.5
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 1.8e-06 55.8 160 26.2
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.4e-06 55.5 133 27.8
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 2.4e-06 55.5 40 57.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 4.0e-06 54.7 53 43.4
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 6.9e-06 53.9 102 33.3
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 9.0e-06 53.5 157 24.2


User provided reference genes

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