Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 0.0e+00 3002.6 1738 100.0
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.2e-43 183.7 172 55.2
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.5e-43 183.3 184 50.5
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 2.0e-43 183.0 170 52.9
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 2.0e-43 183.0 181 54.1
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.6e-43 182.6 183 52.5
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.0e-42 180.6 183 53.0
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.3e-42 180.3 170 55.3
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.3e-42 180.3 170 54.7
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.3e-42 180.3 184 52.7
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.3e-42 180.3 169 50.9
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.3e-42 180.3 180 52.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.7e-42 179.9 179 53.6
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.7e-42 179.9 182 52.7
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 1.7e-42 179.9 170 54.1
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 2.9e-42 179.1 218 45.9
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.8e-42 178.7 170 53.5
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.0e-42 178.3 181 52.5
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 5.0e-42 178.3 170 52.9
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 8.5e-42 177.6 170 54.1
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 8.5e-42 177.6 219 47.9
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.1e-41 177.2 182 50.5
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.5e-41 176.8 170 53.5
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.5e-41 176.8 187 50.3
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 1.5e-41 176.8 170 53.5
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.5e-41 176.8 186 50.0
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.9e-41 176.4 170 54.1
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.5e-41 176.0 170 51.8
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.5e-41 176.0 174 50.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.2e-41 175.6 170 53.5
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 5.5e-41 174.9 175 51.4
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 7.2e-41 174.5 170 52.9
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 7.2e-41 174.5 171 54.4
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 7.2e-41 174.5 170 50.6
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 7.2e-41 174.5 172 51.7
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 7.2e-41 174.5 173 52.6
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 9.4e-41 174.1 170 53.5
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 9.4e-41 174.1 170 52.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 9.4e-41 174.1 197 47.2
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 9.4e-41 174.1 170 52.4
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 1.2e-40 173.7 168 51.2
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.2e-40 173.7 170 51.8
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.6e-40 173.3 170 53.5
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.6e-40 173.3 170 52.9
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.1e-40 172.9 189 49.2
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 3.6e-40 172.2 172 48.8
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 4.7e-40 171.8 170 51.8
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 6.1e-40 171.4 178 51.1
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 6.1e-40 171.4 180 50.6
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 6.1e-40 171.4 175 52.0
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.0e-39 170.6 180 50.6
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 1.0e-39 170.6 182 52.7
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.0e-39 170.6 181 50.8
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-39 169.9 173 51.4
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.8e-39 169.9 170 52.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 2.3e-39 169.5 173 50.9
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.3e-39 169.5 170 51.2
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 3.0e-39 169.1 169 52.7
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 3.0e-39 169.1 170 51.2
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 4.0e-39 168.7 181 49.2
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 4.0e-39 168.7 169 50.3
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 5.2e-39 168.3 176 51.7
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 6.7e-39 167.9 182 48.9
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.1e-38 167.2 170 50.0
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.1e-38 167.2 187 48.1
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.1e-38 167.2 178 48.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.1e-38 167.2 271 41.0
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 1.5e-38 166.8 213 46.5
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.0e-38 166.4 170 50.0
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 2.6e-38 166.0 170 50.0
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.3e-38 165.6 170 50.6
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.3e-38 165.6 170 50.0
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.7e-38 164.9 178 48.9
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.7e-38 164.9 178 47.8
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 7.4e-38 164.5 168 49.4
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 7.4e-38 164.5 160 53.8
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 1.3e-37 163.7 170 48.2
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 1.3e-37 163.7 161 54.7
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.2e-37 162.9 176 48.9
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.2e-37 162.9 176 50.6
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 2.2e-37 162.9 171 49.7
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.8e-37 162.5 167 49.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 6.3e-37 161.4 170 48.8
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 8.2e-37 161.0 183 48.6
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.1e-36 160.6 186 46.2
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.4e-36 160.2 169 47.9
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 2.4e-36 159.5 172 48.3
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 3.1e-36 159.1 161 50.9
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 3.1e-36 159.1 170 46.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.1e-36 159.1 170 48.8
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 5.3e-36 158.3 170 45.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 7.0e-36 157.9 196 45.4
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 2.6e-35 156.0 248 42.3
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 2.6e-35 156.0 247 38.5
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 3.8e-34 152.1 176 45.5
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-33 150.6 182 46.7
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 4.2e-33 148.7 168 45.2
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.6e-32 145.6 168 45.2
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.7e-32 145.2 167 47.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.0e-30 139.8 158 48.7
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 4.4e-30 138.7 166 42.2
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 9.8e-30 137.5 148 50.0
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 9.8e-30 137.5 168 42.9
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.2e-29 136.3 156 45.5
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 2.8e-29 136.0 154 47.4
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.7e-29 135.6 170 42.4
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 6.3e-29 134.8 195 36.4
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 8.3e-29 134.4 174 42.0
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-28 133.7 185 38.9
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.2e-27 130.6 138 48.6
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 1.2e-27 130.6 153 47.1
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.0e-27 129.8 149 47.0
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 3.5e-27 129.0 153 46.4
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.2e-26 126.3 123 54.5
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.9e-25 123.2 172 40.1
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 4.2e-25 122.1 160 40.0
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 5.2e-23 115.2 193 36.3
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-22 114.0 189 34.9
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 2.0e-22 113.2 113 49.6
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 3.4e-22 112.5 193 34.7
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 6.3e-21 108.2 153 44.4
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 8.3e-21 107.8 188 35.6
MCO06G129 Micromonas commoda HOM05D001353 ORTHO05D005187 1.4e-20 107.1 174 37.4
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 4.1e-20 105.5 167 37.1
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 3.8e-18 99.0 167 35.9
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 6.6e-18 98.2 227 31.3
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.2e-16 94.0 123 43.9
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 8.0e-16 91.3 129 40.3
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.0e-15 90.9 180 32.8
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 6.8e-15 88.2 103 46.6
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 3.4e-14 85.9 80 55.0
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 4.9e-13 82.0 91 46.2
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 2.4e-12 79.7 92 46.7
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 7.3e-09 68.2 77 42.9
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 9.5e-09 67.8 56 58.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 6.2e-08 65.1 92 39.1
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 8.0e-08 64.7 58 55.2
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.0e-07 64.3 132 32.6
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.8e-07 63.5 132 32.6
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 4.0e-07 62.4 120 35.0
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.0e-07 62.4 142 32.4
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 6.8e-07 61.6 93 37.6


User provided reference genes

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