Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 9.5e-56 219.9 111 100.0
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 5.1e-17 91.3 93 51.6
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 2.2e-15 85.9 92 51.1
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 3.7e-15 85.1 95 48.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 4.1e-14 81.6 90 45.6
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 9.0e-14 80.5 90 53.3
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.2e-13 80.1 90 44.4
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-12 76.6 91 45.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 6.5e-12 74.3 90 43.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 6.5e-12 74.3 97 41.2
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 6.5e-12 74.3 86 44.2
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 8.5e-12 73.9 91 40.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 8.5e-12 73.9 90 45.6
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 8.5e-12 73.9 90 42.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.1e-11 73.6 90 43.3
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 1.1e-11 73.6 90 43.3
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 1.1e-11 73.6 90 43.3
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-11 73.2 90 44.4
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.9e-11 72.8 91 44.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.9e-11 72.8 90 45.6
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.9e-11 72.8 88 45.5
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.9e-11 72.8 90 42.2
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.5e-11 72.4 91 45.1
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.5e-11 72.4 89 42.7
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 2.5e-11 72.4 90 43.3
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 2.5e-11 72.4 91 42.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.2e-11 72.0 90 42.2
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 5.5e-11 71.2 90 43.3
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 7.2e-11 70.9 90 42.2
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.2e-11 70.9 90 42.2
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 7.2e-11 70.9 90 42.2
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.2e-11 70.9 90 44.4
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 7.2e-11 70.9 90 42.2
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 7.2e-11 70.9 75 54.7
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 7.2e-11 70.9 92 44.6
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 9.4e-11 70.5 90 43.3
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 9.4e-11 70.5 90 43.3
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 9.4e-11 70.5 91 45.1
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-10 70.1 90 42.2
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.2e-10 70.1 90 42.2
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.6e-10 69.7 90 44.4
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.6e-10 69.7 91 41.8
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.6e-10 69.7 90 42.2
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.6e-10 69.7 90 42.2
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 2.1e-10 69.3 90 43.3
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.1e-10 69.3 90 44.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.1e-10 69.3 90 43.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.7e-10 68.9 91 41.8
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.7e-10 68.9 91 44.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 3.6e-10 68.6 90 41.1
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.6e-10 68.6 90 44.4
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 4.6e-10 68.2 87 41.4
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.6e-10 68.2 90 42.2
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 6.1e-10 67.8 91 44.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 6.1e-10 67.8 90 42.2
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.1e-10 67.8 90 42.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 6.1e-10 67.8 90 42.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 6.1e-10 67.8 90 40.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 6.1e-10 67.8 88 38.6
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 6.1e-10 67.8 88 38.6
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 7.9e-10 67.4 94 40.4
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 7.9e-10 67.4 90 42.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.0e-09 67.0 90 44.4
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.0e-09 67.0 91 40.7
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 41.1
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 41.1
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 41.1
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 40.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 40.0
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.4e-09 66.6 91 40.7
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 40.0
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.4e-09 66.6 90 43.3
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.8e-09 66.2 90 42.2
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 1.8e-09 66.2 90 42.2
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.3e-09 65.9 85 42.4
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.3e-09 65.9 90 38.9
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-09 65.5 90 41.1
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.0e-09 65.5 90 38.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 3.0e-09 65.5 93 36.6
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.0e-09 65.5 90 40.0
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.0e-09 65.5 90 41.1
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.0e-09 65.5 90 40.0
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.0e-09 65.5 87 40.2
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.9e-09 65.1 90 41.1
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 3.9e-09 65.1 90 41.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.9e-09 65.1 88 39.8
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 5.1e-09 64.7 90 38.9
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.1e-09 64.7 90 41.1
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 5.1e-09 64.7 90 41.1
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.1e-09 64.7 90 40.0
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 5.1e-09 64.7 90 40.0
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 6.7e-09 64.3 90 38.9
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 6.7e-09 64.3 90 38.9
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 6.7e-09 64.3 90 41.1
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 8.8e-09 63.9 90 38.9
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 8.8e-09 63.9 90 36.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 8.8e-09 63.9 90 41.1
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.1e-08 63.5 90 41.1
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.1e-08 63.5 90 40.0
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.1e-08 63.5 91 37.4
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.1e-08 63.5 90 37.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.5e-08 63.2 91 39.6
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-08 63.2 91 39.6
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-08 63.2 91 39.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-08 63.2 85 40.0
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.5e-08 63.2 88 37.5
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.5e-08 63.2 97 41.2
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.9e-08 62.8 92 40.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.9e-08 62.8 90 40.0
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.9e-08 62.8 90 37.8
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.9e-08 62.8 90 36.7
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.9e-08 62.8 88 40.9
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 2.5e-08 62.4 91 37.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 3.3e-08 62.0 90 38.9
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.3e-08 62.0 88 38.6
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.3e-08 62.0 106 38.7
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.3e-08 62.0 90 37.8
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 5.7e-08 61.2 90 38.9
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 7.4e-08 60.8 92 40.2
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-07 60.1 90 37.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.7e-07 59.7 90 36.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.7e-07 59.7 90 37.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.7e-07 59.7 90 41.1
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 2.2e-07 59.3 87 37.9
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 3.7e-07 58.5 90 36.7
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 3.7e-07 58.5 90 36.7
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.7e-07 58.5 90 36.7
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 3.7e-07 58.5 85 37.6
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 3.7e-07 58.5 52 50.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.1e-06 57.0 90 37.8
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-06 56.2 85 37.6
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-06 56.2 85 37.6
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.8e-06 56.2 85 37.6
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.3e-06 54.7 65 47.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 9.1e-06 53.9 82 37.8
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.1e-06 53.9 90 36.7


User provided reference genes

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