Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 0.0e+00 1626.7 839 100.0
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 2.6e-291 1005.4 628 78.7
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 4.1e-284 981.5 624 77.1
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.2e-283 979.9 630 76.2
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 2.0e-283 979.2 630 76.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 5.9e-283 977.6 629 76.3
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 2.2e-282 975.7 623 76.6
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 2.9e-282 975.3 627 76.4
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 2.5e-281 972.2 625 76.5
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 5.5e-281 971.1 635 75.9
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 7.2e-281 970.7 622 76.4
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 1.2e-280 969.9 638 74.9
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.2e-280 969.9 622 76.5
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.2e-280 969.9 629 75.8
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 2.1e-280 969.1 661 73.5
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 4.7e-280 968.0 634 75.6
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 4.7e-280 968.0 634 75.6
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 8.0e-280 967.2 634 74.9
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.0e-279 966.8 634 74.9
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 1.4e-279 966.5 634 75.4
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 1.8e-279 966.1 622 75.1
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 1.8e-279 966.1 626 75.7
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.8e-279 966.1 634 74.9
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 2.3e-279 965.7 630 75.9
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 4.0e-279 964.9 634 75.1
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 8.8e-279 963.8 627 74.8
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 1.5e-278 963.0 622 74.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 2.0e-278 962.6 649 74.1
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 2.0e-278 962.6 651 73.9
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 2.6e-278 962.2 622 76.0
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 3.4e-278 961.8 627 75.0
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 5.7e-278 961.1 640 73.8
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 5.7e-278 961.1 633 74.9
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 7.5e-278 960.7 622 75.6
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 2.2e-277 959.1 622 75.7
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 2.2e-277 959.1 638 74.6
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 2.2e-277 959.1 646 73.7
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 2.8e-277 958.7 626 75.4
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 8.3e-277 957.2 621 75.7
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 8.3e-277 957.2 628 74.7
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.1e-276 956.8 648 73.1
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 1.1e-276 956.8 681 70.6
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 1.4e-276 956.4 621 75.8
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 1.8e-276 956.1 649 73.7
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 1.8e-276 956.1 681 70.6
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 2.4e-276 955.7 626 74.8
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 3.1e-276 955.3 651 72.8
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 5.4e-276 954.5 622 75.2
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 5.4e-276 954.5 659 72.5
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 7.0e-276 954.1 648 73.0
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 1.2e-275 953.4 652 73.2
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.2e-275 953.4 658 72.2
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 1.2e-275 953.4 649 73.3
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.6e-275 953.0 652 73.0
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 2.0e-275 952.6 668 72.2
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 2.7e-275 952.2 646 73.8
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 2.7e-275 952.2 638 74.3
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 4.5e-275 951.4 627 74.5
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 4.5e-275 951.4 657 73.1
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 1.3e-274 949.9 627 74.0
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 6.5e-274 947.6 627 73.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 1.1e-273 946.8 641 73.2
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.5e-273 946.4 621 74.2
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 2.5e-273 945.7 664 72.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 3.2e-273 945.3 655 72.7
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 3.2e-273 945.3 641 73.2
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.2e-273 945.3 664 72.3
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 7.2e-273 944.1 682 70.1
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 7.2e-273 944.1 682 70.1
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 4.7e-272 941.4 625 74.7
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.3e-271 939.1 668 70.5
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 5.2e-271 937.9 664 71.8
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 6.8e-271 937.6 641 72.4
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 3.4e-270 935.3 622 74.3
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 2.0e-267 926.0 703 67.6
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.8e-266 921.8 651 71.4
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.4e-263 913.3 626 72.5
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 6.8e-263 911.0 626 72.8
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 6.4e-261 904.4 622 72.2
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 3.0e-258 895.6 622 72.2
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.5e-257 893.3 622 71.9
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.1e-256 889.4 740 63.1
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 8.9e-255 884.0 633 70.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.4e-254 882.1 639 70.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 8.6e-250 867.5 828 56.6
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.3e-249 865.5 662 67.8
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 5.8e-246 854.7 658 66.6
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 7.5e-246 854.4 589 73.0
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.9e-244 849.7 714 62.9
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 5.6e-233 811.6 543 73.3
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.6e-232 810.1 484 81.6
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.2e-230 803.9 485 80.4
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 4.4e-230 802.0 484 80.8
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 3.3e-225 785.8 626 64.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.8e-224 781.9 530 73.8
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 9.0e-223 777.7 521 73.9
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.5e-222 776.9 653 63.1
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.8e-218 763.5 503 75.1
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 2.5e-217 759.6 503 74.4
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.9e-213 746.1 503 72.6
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.4e-207 726.5 443 79.5
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.2e-206 724.2 575 64.5
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 5.5e-204 715.3 428 80.4
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.5e-193 679.9 389 85.1
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 3.2e-172 609.8 479 64.9
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.3e-165 587.8 407 72.2
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 8.6e-157 558.5 413 67.8
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 2.3e-149 533.9 353 73.7
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 7.0e-143 512.3 403 64.5
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 5.6e-132 476.1 598 44.3
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 9.9e-129 465.3 281 79.7
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 6.0e-118 429.5 664 39.0
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.1e-115 421.0 449 52.6
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 6.9e-114 416.0 654 40.7
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-105 388.7 489 44.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 8.4e-88 329.3 354 51.7
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 3.9e-85 320.5 346 51.2
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.8e-74 285.0 314 50.3
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 2.5e-71 274.6 160 83.8
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.0e-65 255.0 197 64.0
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 2.4e-58 231.5 162 69.8
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.5e-52 212.2 167 62.3
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.0e-52 211.8 187 55.6
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 2.2e-48 198.4 113 85.0
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.2e-44 186.0 231 47.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 3.3e-39 167.9 182 47.8
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 7.2e-39 166.8 103 80.6
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.8e-38 164.9 106 76.4
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.6e-36 158.3 175 51.4
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 4.4e-36 157.5 143 58.0
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 3.3e-31 141.4 83 81.9
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 3.6e-30 137.9 72 87.5
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 5.4e-26 124.0 71 73.2
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 5.6e-23 114.0 113 54.0
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 4.7e-22 110.9 96 59.4
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.7e-19 102.4 134 42.5
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.6e-17 95.9 66 65.2
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.2e-14 86.3 64 59.4
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.1e-14 85.5 101 47.5
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.6e-12 78.6 41 87.8
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 4.1e-10 71.2 47 68.1
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.0e-08 66.6 63 52.4
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.0e-08 66.6 48 66.7
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.5e-07 62.8 74 48.6


User provided reference genes

Program Settings