Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 0.0e+00 4675.2 2366 100.0
PRCOL_00001171 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 5.3e-79 301.6 2466 22.2
PRCOL_00005014 Prasinoderma coloniale HOM05D002653 ORTHO05D002623 8.9e-34 151.4 625 25.6
Cre10.g441650 Chlamydomonas reinhardtii HOM05D002653 ORTHO05D002623 1.6e-27 130.6 350 28.3
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 3.9e-21 109.4 247 32.4
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 5.1e-21 109.0 240 31.7
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.1e-20 107.8 689 21.9
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.5e-20 107.5 305 28.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 2.1e-19 103.6 283 27.9
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 1.4e-18 100.9 246 30.5
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.4e-18 100.9 252 28.2
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 1.8e-18 100.5 263 26.6
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 2.3e-18 100.1 305 26.9
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 1.2e-17 97.8 303 29.4
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 1.2e-17 97.8 245 27.3
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.2e-17 97.8 271 26.2
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 1.5e-17 97.4 272 27.2
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.5e-17 97.4 285 27.4
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.5e-17 97.4 270 27.0
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 1.5e-17 97.4 271 26.2
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.6e-17 96.7 349 25.2
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 2.6e-17 96.7 243 25.9
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 2.6e-17 96.7 262 28.6
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 4.4e-17 95.9 284 27.1
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 5.8e-17 95.5 208 28.4
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 5.8e-17 95.5 295 26.1
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 5.8e-17 95.5 275 26.9
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 7.6e-17 95.1 397 25.9
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 9.9e-17 94.7 280 30.0
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 9.9e-17 94.7 276 26.1
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.3e-16 94.4 295 25.8
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.7e-16 94.0 270 24.8
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.7e-16 94.0 270 24.8
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.7e-16 94.0 270 24.8
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 2.9e-16 93.2 310 24.8
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 2.9e-16 93.2 294 27.9
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.9e-16 93.2 296 25.0
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 2.9e-16 93.2 265 26.0
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 3.8e-16 92.8 267 25.1
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 8.4e-16 91.7 400 23.8
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 8.4e-16 91.7 280 25.0
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 1.1e-15 91.3 284 27.5
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.1e-15 91.3 270 25.6
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 1.1e-15 91.3 300 25.7
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 1.4e-15 90.9 272 26.8
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 1.4e-15 90.9 280 25.4
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 1.9e-15 90.5 265 26.8
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 1.9e-15 90.5 291 26.5
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 3.2e-15 89.7 246 26.4
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 3.2e-15 89.7 282 26.2
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 3.2e-15 89.7 265 25.3
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 4.1e-15 89.4 285 25.6
Lj4C825G3 Lonicera japonica HOM05D002653 ORTHO05D002623 4.1e-15 89.4 272 26.8
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 5.4e-15 89.0 291 25.1
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 7.1e-15 88.6 291 26.5
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 9.2e-15 88.2 367 23.4
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 9.2e-15 88.2 263 25.1
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 1.2e-14 87.8 274 24.8
Cfa027332 Carpinus fangiana HOM05D001092 ORTHO05D000923 1.6e-14 87.4 711 21.2
CBR_g47049 Chara braunii HOM05D002653 ORTHO05D002623 1.6e-14 87.4 185 28.6
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 1.6e-14 87.4 265 25.7
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 1.6e-14 87.4 274 25.5
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 2.1e-14 87.0 275 24.7
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 2.7e-14 86.7 280 26.8
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 2.7e-14 86.7 384 22.4
Migut.L00525 Erythranthe guttata HOM05D002653 ORTHO05D002623 3.5e-14 86.3 279 25.8
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 6.0e-14 85.5 395 23.0
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 6.0e-14 85.5 413 24.7
Ciclev10010886m.g Citrus clementina HOM05D002653 ORTHO05D002623 7.8e-14 85.1 301 26.6
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 7.8e-14 85.1 338 27.2
HPP92_001355 Vanilla planifolia HOM05D002653 ORTHO05D002623 7.8e-14 85.1 259 24.3
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.0e-13 84.7 264 24.2
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 2.3e-13 83.6 257 25.3
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 5.1e-13 82.4 284 24.3
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 5.1e-13 82.4 311 26.7
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 6.6e-13 82.0 386 22.0
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 1.1e-12 81.3 268 24.6
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 1.1e-12 81.3 277 25.6
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 1.1e-12 81.3 300 25.3
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.5e-12 80.9 427 22.7
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 1.9e-12 80.5 288 25.7
Sp2g22690 Schrenkiella parvula HOM05D002653 ORTHO05D002623 1.9e-12 80.5 268 25.7
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 2.5e-12 80.1 399 25.3
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 2.5e-12 80.1 297 23.6
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 5.6e-12 79.0 287 26.5
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 7.3e-12 78.6 285 24.6
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 1.2e-11 77.8 285 23.5
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 1.2e-11 77.8 285 23.5
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 1.2e-11 77.8 430 23.3
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.2e-11 77.8 279 26.2
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 1.2e-11 77.8 291 27.5
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.1e-11 77.0 538 21.0
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.1e-11 77.0 538 21.0
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 2.1e-11 77.0 463 25.7
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 2.8e-11 76.6 373 21.4
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 2.8e-11 76.6 432 22.7
Ca_21396_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 3.6e-11 76.3 543 20.8
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 4.7e-11 75.9 285 22.5
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.1e-10 74.7 513 22.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 1.4e-10 74.3 397 24.2
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 2.4e-10 73.6 285 22.1
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 3.1e-10 73.2 391 23.5
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 4.0e-10 72.8 326 23.0
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 4.0e-10 72.8 282 25.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-09 71.2 373 24.4
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 1.5e-09 70.9 406 24.4
SMO302G0008 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 3.4e-09 69.7 205 27.3
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 3.4e-09 69.7 234 25.2
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 5.8e-09 68.9 221 26.2
COL.COLO4_34529 Corchorus olitorius HOM05D001092 ORTHO05D000923 5.8e-09 68.9 382 23.6
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 7.6e-09 68.6 221 26.2
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 9.9e-09 68.2 471 22.5
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 9.9e-09 68.2 205 25.9
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 9.9e-09 68.2 229 25.3
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 1.7e-08 67.4 185 25.9
CSS0023976 Camellia sinensis var. sinensis HOM05D000259 ORTHO05D000155 2.2e-08 67.0 141 31.9
Gohir.A02G056800 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.2e-08 67.0 350 23.4
Gorai.005G069700 Gossypium raimondii HOM05D001092 ORTHO05D000923 2.2e-08 67.0 352 23.3
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 2.2e-08 67.0 288 25.7
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 2.9e-08 66.6 462 24.2
HanXRQChr10g0319861 Helianthus annuus HOM05D001092 ORTHO05D000923 2.9e-08 66.6 532 21.1
TAR636G0111 Trochodendron aralioides HOM05D000259 ORTHO05D000155 2.9e-08 66.6 138 32.6
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 4.9e-08 65.9 373 22.8
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 4.9e-08 65.9 373 22.8
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 4.9e-08 65.9 192 26.0
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 4.9e-08 65.9 378 23.3
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 4.9e-08 65.9 534 20.2
Peaxi162Scf00058g00031 Petunia axillaris HOM05D000259 ORTHO05D000155 6.4e-08 65.5 138 33.3
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 8.4e-08 65.1 193 27.5
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 1.1e-07 64.7 243 28.4
Ciclev10004114m.g Citrus clementina HOM05D001092 ORTHO05D000923 1.1e-07 64.7 365 21.9
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 1.1e-07 64.7 443 20.8
Gohir.A10G175801 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.4e-07 64.3 373 22.5
PSO384G0983 Papaver somniferum HOM05D000259 ORTHO05D000155 1.4e-07 64.3 138 31.2
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.4e-07 64.3 276 23.6
Dinv43906 Davidia involucrata HOM05D000259 ORTHO05D000155 1.9e-07 63.9 138 31.9
ClCG10G012560 Citrullus lanatus HOM05D000259 ORTHO05D000155 2.4e-07 63.5 138 32.6
Manes.10G148000 Manihot esculenta HOM05D000259 ORTHO05D000155 2.4e-07 63.5 141 31.9
CAN.G1393.17 Capsicum annuum HOM05D000259 ORTHO05D000155 3.2e-07 63.2 163 30.1
CDE05G3433 Ceratophyllum demersum HOM05D000259 ORTHO05D000155 3.2e-07 63.2 138 32.6
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 3.2e-07 63.2 155 31.0
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 4.2e-07 62.8 193 27.5
MBI01_g15746_MAGBIO Magnolia biondii HOM05D000259 ORTHO05D000155 4.2e-07 62.8 138 30.4
Nitab4.5_0003951g0010 Nicotiana tabacum HOM05D000259 ORTHO05D000155 4.2e-07 62.8 138 30.4
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 5.4e-07 62.4 273 23.8
Nitab4.5_0001542g0130 Nicotiana tabacum HOM05D000259 ORTHO05D000155 5.4e-07 62.4 138 30.4
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 5.4e-07 62.4 211 24.2
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 7.1e-07 62.0 373 22.8
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 7.1e-07 62.0 190 28.4
Ciclev10030600m.g Citrus clementina HOM05D000259 ORTHO05D000155 9.3e-07 61.6 141 31.2
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 9.3e-07 61.6 186 23.7
Potri.009G065600 Populus trichocarpa HOM05D000259 ORTHO05D000155 9.3e-07 61.6 141 31.2
Glyma.08G152000 Glycine max HOM05D000259 ORTHO05D000155 1.2e-06 61.2 138 31.9
Gohir.D08G167100 Gossypium hirsutum HOM05D000259 ORTHO05D000155 1.2e-06 61.2 138 31.9
Mapoly0114s0023 Marchantia polymorpha HOM05D002176 ORTHO05D002598 1.2e-06 61.2 130 33.1
CSS0037450 Camellia sinensis var. sinensis HOM05D000259 ORTHO05D000155 2.1e-06 60.5 138 31.2
Hma1.2p1_3271F.1_g334770 Hydrangea macrophylla HOM05D000259 ORTHO05D000155 2.1e-06 60.5 138 31.9
Potri.001G271400 Populus trichocarpa HOM05D000259 ORTHO05D000155 2.1e-06 60.5 111 34.2
TWI74G1560 Tripterygium wilfordii HOM05D000259 ORTHO05D000155 2.1e-06 60.5 138 31.9
unitig_88.g27670 Utricularia gibba HOM05D000259 ORTHO05D000155 2.1e-06 60.5 111 32.4
Aa31LG11G7490 Aethionema arabicum HOM05D000259 ORTHO05D000155 2.7e-06 60.1 138 31.2
Aqoxy1G00198 Aquilegia oxysepala HOM05D000259 ORTHO05D000155 2.7e-06 60.1 138 29.7
arahy.Tifrunner.gnm1.ann1.65F1V5 Arachis hypogaea HOM05D000259 ORTHO05D000155 2.7e-06 60.1 138 32.6
CANSAT01G2552 Cannabis sativa HOM05D000259 ORTHO05D000155 2.7e-06 60.1 165 29.1
AUR62005403 Chenopodium quinoa HOM05D000259 ORTHO05D000155 2.7e-06 60.1 164 29.9
AUR62014063 Chenopodium quinoa HOM05D000259 ORTHO05D000155 2.7e-06 60.1 164 29.9
Haze_03602 Corylus avellana HOM05D000259 ORTHO05D000155 2.7e-06 60.1 151 29.1
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 2.7e-06 60.1 198 28.8
MBI04_g14271_MAGBIO Magnolia biondii HOM05D000259 ORTHO05D000155 2.7e-06 60.1 111 35.1
Nitab4.5_0004202g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 2.7e-06 60.1 165 29.1
Oeu064331.1 Olea europaea HOM05D000259 ORTHO05D000155 2.7e-06 60.1 138 31.9
arahy.Tifrunner.gnm1.ann1.F8RANV Arachis hypogaea HOM05D000259 ORTHO05D000155 3.5e-06 59.7 111 35.1
CSS0018423 Camellia sinensis var. sinensis HOM05D000259 ORTHO05D000155 3.5e-06 59.7 138 31.2
Psat0s2674g0160 Pisum sativum HOM05D000259 ORTHO05D000155 3.5e-06 59.7 130 31.5
Psat0s45g0040 Pisum sativum HOM05D001092 ORTHO05D000923 3.5e-06 59.7 191 25.7
Cc06_g16240 Coffea canephora HOM05D000259 ORTHO05D000155 4.6e-06 59.3 138 30.4
Gohir.A08G146200 Gossypium hirsutum HOM05D000259 ORTHO05D000155 4.6e-06 59.3 111 33.3
Cpa.g.sc1296.3 Carica papaya HOM05D000259 ORTHO05D000155 6.0e-06 58.9 138 31.9
CiPaw.10G028500 Carya illinoinensis HOM05D000259 ORTHO05D000155 7.8e-06 58.5 138 31.2
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 7.8e-06 58.5 193 24.9
Oeu064274.1 Olea europaea HOM05D000259 ORTHO05D000155 7.8e-06 58.5 138 30.4


User provided reference genes

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