Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 0.0e+00 1089.7 755 100.0
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.7e-276 956.1 755 91.1
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 4.2e-70 270.4 453 76.2
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.8e-65 255.0 427 77.3
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 3.1e-65 254.2 441 75.1
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 3.1e-65 254.2 441 75.1
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 9.0e-65 252.7 456 73.5
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.5e-64 251.9 458 73.6
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 2.6e-64 251.1 432 75.7
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.6e-64 251.1 429 46.2
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 2.6e-64 251.1 460 74.1
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 2.6e-64 251.1 474 71.7
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 4.5e-64 250.4 451 74.1
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 5.9e-64 250.0 429 76.2
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 7.6e-64 249.6 448 74.3
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.0e-63 249.2 446 73.5
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.3e-63 248.8 441 74.4
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.9e-63 247.7 464 70.5
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 3.8e-63 247.3 431 61.5
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 8.5e-63 246.1 558 62.9
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.4e-62 245.4 453 72.6
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.4e-62 245.4 441 73.9
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 2.5e-62 244.6 459 60.1
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.5e-62 244.6 580 61.2
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 3.2e-62 244.2 529 64.5
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 3.2e-62 244.2 428 75.5
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 4.2e-62 243.8 451 63.2
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.2e-62 243.8 458 72.3
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 4.2e-62 243.8 441 73.7
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 4.2e-62 243.8 441 74.1
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 5.5e-62 243.4 436 74.3
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 7.2e-62 243.0 428 75.5
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 9.4e-62 242.7 537 64.4
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 1.6e-61 241.9 541 64.9
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 2.1e-61 241.5 691 56.6
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.1e-61 241.5 458 72.1
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 3.6e-61 240.7 451 73.4
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 3.6e-61 240.7 441 74.1
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 7.9e-61 239.6 458 72.1
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-60 238.8 439 73.8
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.8e-60 238.4 423 75.2
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-60 238.4 461 53.4
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.0e-60 237.7 709 53.9
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 3.0e-60 237.7 437 73.2
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 3.0e-60 237.7 539 65.3
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 3.9e-60 237.3 660 56.8
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 5.1e-60 236.9 438 73.1
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 5.1e-60 236.9 435 74.5
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 5.1e-60 236.9 429 61.8
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 6.7e-60 236.5 371 82.7
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 8.8e-60 236.1 687 56.5
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.1e-59 235.7 432 73.8
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.5e-59 235.3 660 57.1
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.5e-59 235.3 677 54.9
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.9e-59 235.0 703 54.8
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.5e-59 234.6 463 70.8
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 2.5e-59 234.6 697 55.2
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 7.4e-59 233.0 569 61.9
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.7e-58 231.9 693 55.7
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.2e-58 231.5 475 45.9
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 2.8e-58 231.1 725 54.3
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 3.7e-58 230.7 664 57.2
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 4.8e-58 230.3 747 53.0
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 4.8e-58 230.3 424 75.5
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 6.3e-58 229.9 678 55.3
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.1e-57 229.2 454 72.0
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 1.4e-57 228.8 452 57.3
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 3.1e-57 227.6 691 54.7
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.1e-57 227.3 443 67.3
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 5.3e-57 226.9 608 58.4
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 9.1e-57 226.1 577 60.8
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.2e-56 225.7 680 54.6
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 2.0e-56 224.9 684 55.0
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 2.0e-56 224.9 636 57.1
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 5.9e-56 223.4 601 58.4
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.0e-55 222.6 474 67.5
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-55 222.2 683 55.3
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.3e-55 222.2 666 56.6
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.7e-55 221.9 681 55.4
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.1e-54 219.2 709 52.9
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.9e-54 218.4 716 52.5
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 2.5e-54 218.0 672 55.7
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 4.2e-54 217.2 653 55.6
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 7.2e-54 216.5 659 55.4
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.6e-53 215.3 698 53.7
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 6.1e-53 213.4 372 65.6
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 6.1e-53 213.4 428 50.5
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 1.4e-52 212.2 416 75.0
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 3.0e-52 211.1 695 52.4
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 8.8e-52 209.5 430 71.9
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.1e-51 209.1 669 56.2
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 1.7e-50 205.3 440 57.0
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.8e-50 203.8 438 71.2
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-49 202.2 439 70.6
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-49 202.2 439 70.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 2.4e-49 201.4 448 71.7
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 3.1e-49 201.1 439 70.2
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 3.1e-49 201.1 439 70.2
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 3.1e-49 201.1 439 70.6
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 5.3e-49 200.3 434 69.6
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 5.3e-49 200.3 642 37.2
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 9.1e-49 199.5 478 68.4
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.6e-48 198.0 525 49.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 4.5e-48 197.2 430 71.4
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-45 187.6 375 76.5
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.0e-44 184.5 672 44.3
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-43 182.6 375 74.9
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.3e-43 181.0 127 70.9
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 7.4e-43 179.9 126 69.8
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 7.4e-43 179.9 127 69.3
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-42 178.7 373 69.4
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.4e-41 175.6 669 27.2
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.3e-39 169.1 828 31.9
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.1e-38 166.0 149 58.4
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 5.5e-38 163.7 424 36.1
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 2.3e-36 158.3 360 47.2
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 7.5e-35 153.3 582 55.7
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 2.7e-32 144.8 478 34.9
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 1.0e-31 142.9 597 52.6
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 2.5e-30 138.3 535 42.1
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 2.5e-30 138.3 372 73.7
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.2e-29 136.0 167 43.7
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.6e-29 135.6 599 54.8
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 1.6e-29 135.6 116 58.6
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 2.1e-29 135.2 373 73.5
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 5.2e-28 130.6 310 29.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 4.4e-27 127.5 74 68.9
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 5.7e-27 127.1 376 32.4
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-27 126.7 84 64.3
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 4.8e-26 124.0 429 41.7
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 6.3e-26 123.6 284 34.2
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.8e-25 122.1 78 71.8
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-24 119.4 79 69.6
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 2.0e-24 118.6 140 47.9
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.0e-23 116.3 100 53.0
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 6.6e-23 113.6 84 58.3
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.6e-23 113.6 84 58.3
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-22 112.5 84 57.1
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.5e-22 111.7 88 56.8
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.2e-22 110.2 71 63.4
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-21 109.4 132 46.2
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.1e-21 108.6 135 41.5
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 3.6e-21 107.8 71 62.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 3.6e-21 107.8 71 62.0
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 6.1e-21 107.1 356 31.2
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.4e-20 105.9 88 55.7
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 1.7e-18 99.0 86 59.3
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 2.4e-17 95.1 300 35.3
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.1e-17 94.7 199 32.7
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.1e-17 94.4 53 73.6
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.1e-13 80.5 124 40.3
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.4e-11 74.7 62 58.1
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-11 73.6 54 57.4
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-10 72.4 54 55.6
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-09 69.7 121 39.7
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-09 69.3 121 39.7
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.9e-06 58.9 45 64.4
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 1.9e-06 58.9 45 64.4
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 2.5e-06 58.5 56 51.8


User provided reference genes

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