Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 6.2e-177 624.0 313 100.0
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.2e-140 503.4 313 81.5
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.2e-140 503.4 327 78.6
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 2.7e-140 502.3 313 79.6
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.0e-139 500.4 313 80.5
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 5.1e-139 498.0 324 77.8
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.1e-138 496.9 322 78.3
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 8.2e-137 490.7 322 77.0
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 1.4e-136 490.0 324 76.9
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 1.4e-136 490.0 324 76.9
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 9.0e-136 487.3 322 76.7
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 2.6e-135 485.7 326 76.7
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.0e-123 447.2 325 72.0
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 2.0e-111 406.4 327 64.8
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 5.0e-102 375.2 333 58.3
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 5.5e-101 371.7 339 58.1
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 7.2e-101 371.3 332 58.1
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 9.4e-101 370.9 333 57.7
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 2.7e-100 369.4 327 59.0
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 2.7e-100 369.4 327 57.8
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 6.1e-100 368.2 334 58.4
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 8.0e-100 367.9 329 56.5
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.3e-99 366.3 336 58.0
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.3e-99 366.3 336 58.6
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.0e-99 365.9 332 59.3
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 3.0e-99 365.9 316 59.8
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 3.0e-99 365.9 326 57.1
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 4.0e-99 365.5 332 58.1
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 4.0e-99 365.5 334 57.8
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.8e-99 364.4 327 56.9
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-98 364.0 327 56.6
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 2.0e-98 363.2 335 57.0
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 2.6e-98 362.8 331 58.3
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 4.4e-98 362.1 336 58.3
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 1.7e-97 360.1 325 58.5
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 2.2e-97 359.8 337 58.8
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 2.8e-97 359.4 338 58.6
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.7e-97 359.0 331 55.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 3.7e-97 359.0 334 56.0
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 3.7e-97 359.0 335 57.3
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 8.3e-97 357.8 336 58.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 8.3e-97 357.8 329 57.8
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 8.3e-97 357.8 332 56.6
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.4e-96 357.1 329 57.8
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.8e-96 356.7 338 58.0
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.4e-96 356.3 329 55.0
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 3.1e-96 355.9 336 58.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 4.1e-96 355.5 336 55.1
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 4.1e-96 355.5 336 56.2
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 7.0e-96 354.8 336 56.2
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 7.0e-96 354.8 337 57.0
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 9.1e-96 354.4 350 54.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 9.1e-96 354.4 331 55.9
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.2e-95 354.0 328 57.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.7e-95 352.8 335 57.0
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 5.9e-95 351.7 330 56.7
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 7.7e-95 351.3 333 55.9
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.3e-94 350.5 331 55.9
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 6.6e-94 348.2 340 55.3
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 8.6e-94 347.8 308 61.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.1e-93 347.4 333 56.8
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.1e-93 347.4 331 55.9
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.5e-93 347.1 332 53.9
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.5e-93 347.1 335 55.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 2.5e-93 346.3 326 56.4
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 7.2e-93 344.7 359 53.8
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-92 344.0 371 50.4
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.6e-92 343.6 328 54.3
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.1e-92 343.2 316 57.3
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.6e-92 342.4 331 55.9
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.6e-92 342.4 345 54.5
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.0e-91 340.9 331 55.6
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 8.9e-91 337.8 333 55.6
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.0e-90 336.7 330 54.8
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.4e-90 335.9 336 54.2
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.7e-90 335.1 311 54.7
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.3e-89 334.0 311 57.6
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.7e-89 333.6 330 55.8
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.3e-89 331.6 329 54.1
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.3e-89 331.6 329 54.1
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 6.3e-89 331.6 337 54.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 8.3e-89 331.3 326 54.6
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.9e-86 322.8 334 52.7
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 2.9e-86 322.8 309 53.4
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.2e-84 317.4 339 50.7
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 4.0e-83 312.4 330 52.4
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 2.6e-82 309.7 327 51.7
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.9e-80 303.5 356 48.9
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.3e-78 296.6 329 51.4
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 3.0e-78 296.2 329 51.4
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 5.2e-75 285.4 330 46.7
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 6.8e-75 285.0 290 54.1
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.5e-74 283.9 320 47.8
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.3e-73 280.8 355 44.5
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.6e-70 268.5 298 50.7
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.1e-69 267.7 288 52.8
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 4.0e-67 259.2 317 47.3
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 8.9e-67 258.1 179 76.5
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.7e-65 253.8 240 55.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.5e-61 240.7 269 49.1
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 3.4e-58 229.6 245 51.8
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 7.8e-55 218.4 462 33.5
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 4.3e-53 212.6 312 40.7
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 1.5e-50 204.1 327 37.9
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.4e-48 196.8 314 38.5
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 1.2e-42 177.9 176 52.3
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.4e-40 170.2 143 61.5
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 6.0e-39 165.6 181 52.5
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.2e-34 151.4 125 60.0
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.0e-34 150.6 175 45.1
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 5.8e-34 149.1 144 52.1
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 4.2e-32 142.9 166 50.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 9.3e-32 141.7 82 82.9
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.6e-28 131.0 135 51.9
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 2.5e-24 117.1 155 43.2
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 6.9e-19 99.0 70 71.4
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 6.9e-19 99.0 132 43.9
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 1.4e-14 84.7 68 54.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 2.0e-13 80.9 57 59.6
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.1e-11 75.1 82 53.7
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 8.5e-09 65.5 47 66.0


User provided reference genes

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