Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 0.0e+00 1140.9 626 100.0
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.6e-216 755.0 622 70.6
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 6.1e-216 754.6 632 69.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.0e-194 684.1 651 65.9
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.8e-189 666.0 693 63.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.0e-179 633.3 626 64.4
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.0e-179 633.3 626 64.4
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-177 627.1 630 63.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.5e-177 626.3 623 62.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-176 624.0 689 59.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-176 624.0 628 63.4
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.8e-176 622.9 685 61.2
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-175 620.5 690 58.7
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 8.3e-173 611.3 673 58.8
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.9e-161 573.5 682 56.9
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 7.3e-161 571.6 627 60.6
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 3.5e-155 552.7 665 56.1
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 9.9e-134 481.5 765 46.9
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.8e-119 434.1 622 49.4
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.7e-113 412.5 803 43.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.6e-110 403.7 634 46.5
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 5.5e-108 396.0 637 46.0
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-107 394.8 709 45.3
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.3e-106 390.6 637 45.8
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.3e-105 386.3 684 43.1
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.6e-104 384.4 761 40.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.5e-102 377.9 655 42.7
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.2e-100 370.2 742 41.1
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.4e-100 368.6 636 43.9
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.0e-98 363.6 815 38.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-97 361.7 638 44.5
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-97 360.9 636 44.0
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.0e-97 360.9 637 43.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.4e-95 354.0 658 43.3
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.9e-92 344.4 642 43.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 5.5e-92 342.8 591 44.5
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 1.6e-91 341.3 708 41.8
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 1.6e-91 341.3 708 41.8
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 5.2e-90 336.3 562 44.8
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-87 328.2 708 41.0
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.6e-86 323.9 787 39.4
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.6e-81 307.4 911 35.7
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 1.7e-80 304.7 664 40.4
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 4.1e-79 300.1 715 38.7
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.6e-57 227.6 348 46.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.4e-49 200.3 628 33.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-47 195.7 660 33.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.9e-44 184.9 630 32.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.6e-44 183.3 656 33.4
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 4.7e-43 180.3 678 34.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.4e-42 178.7 115 83.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.0e-42 177.2 631 32.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 9.9e-41 172.6 649 34.2
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.9e-40 170.2 162 63.6
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.4e-39 168.7 605 34.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 9.2e-39 166.0 664 30.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.9e-36 158.3 661 29.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.4e-33 147.5 636 30.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.2e-32 144.8 580 29.8
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.9e-32 143.7 405 33.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.2e-31 141.0 363 36.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.4e-31 140.2 454 32.8
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 7.1e-31 139.8 669 30.5
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 9.2e-31 139.4 427 35.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.2e-30 139.0 455 33.2
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.0e-29 136.0 483 31.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-29 134.8 625 29.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 5.1e-29 133.7 557 28.9
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 5.1e-29 133.7 619 29.9
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.1e-28 132.5 672 29.2
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.3e-28 130.6 427 34.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.1e-27 128.3 403 33.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.8e-27 127.9 431 34.3
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.7e-27 127.1 651 27.8
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-26 125.9 701 29.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 4.0e-26 124.0 640 29.4
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 3.4e-25 120.9 668 30.8
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 3.8e-24 117.5 725 28.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.4e-24 116.7 413 31.5
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 8.4e-24 116.3 417 31.2
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-23 115.9 431 31.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.1e-23 113.2 435 31.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.5e-22 110.9 587 28.4
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.6e-22 110.5 386 31.9
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 7.8e-22 109.8 414 30.7
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-21 108.6 377 31.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.7e-21 108.6 305 31.5
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.9e-21 107.5 505 29.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.9e-21 107.5 477 28.9
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 5.1e-21 107.1 654 29.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-20 105.1 458 28.8
CARHR119580 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.3e-20 103.2 71 74.6
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 7.3e-20 103.2 685 28.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.6e-19 102.1 611 29.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.6e-19 102.1 678 27.1
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.6e-19 102.1 318 32.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.1e-19 101.7 484 27.3
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 3.6e-19 100.9 91 61.5
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.6e-19 100.9 91 61.5
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 6.2e-19 100.1 591 25.9
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 8.1e-19 99.8 91 60.4
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.8e-18 98.6 302 29.8
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.1e-18 97.8 629 26.1
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 5.3e-18 97.1 689 24.8
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 5.3e-18 97.1 435 26.7
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 6.9e-18 96.7 91 60.4
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 9.0e-18 96.3 624 31.6
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.5e-17 95.5 348 29.9
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 3.4e-17 94.4 91 59.3
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.7e-16 92.0 302 32.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 3.8e-16 90.9 426 28.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 3.8e-16 90.9 417 27.3
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 6.4e-16 90.1 483 27.1
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 8.4e-16 89.7 679 26.7
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.1e-15 89.4 574 25.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.9e-15 88.6 626 28.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.2e-15 87.8 449 27.6
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.6e-14 85.5 424 27.4
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.7e-14 84.7 354 28.8
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 4.6e-14 84.0 419 28.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-14 84.0 632 25.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 6.0e-14 83.6 620 25.5
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.0e-13 82.8 436 29.1
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 1.3e-13 82.4 108 48.1
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.8e-13 82.0 701 27.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.8e-13 82.0 260 32.3
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-13 81.6 623 25.5
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 3.9e-13 80.9 299 31.8
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.9e-13 80.9 484 27.9
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 5.1e-13 80.5 653 23.7
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.1e-12 79.3 393 28.8
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.1e-12 79.3 208 35.6
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-12 78.6 191 36.1
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.9e-12 78.6 259 31.3
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 3.3e-12 77.8 84 50.0
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 7.4e-12 76.6 619 25.5
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 7.4e-12 76.6 730 29.0
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 1.3e-11 75.9 84 48.8
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.3e-11 75.9 253 30.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.6e-11 75.5 189 33.9
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.1e-11 75.1 460 27.6
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 4.8e-11 73.9 342 27.2
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 8.1e-11 73.2 603 25.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.4e-10 72.4 424 25.9
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 1.8e-10 72.0 81 51.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.8e-10 72.0 294 31.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.4e-10 71.6 542 25.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 5.3e-10 70.5 430 25.3
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.5e-09 67.4 225 33.3
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 7.6e-09 66.6 291 28.2
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.3e-08 65.9 149 37.6
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-08 65.1 220 31.8
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 8.4e-08 63.2 592 24.8
BcaC07g36822 Brassica carinata HOM05D030889 ORTHO05D027098 1.1e-07 62.8 111 53.2
C08p01910 Brassica napus HOM05D030889 ORTHO05D027098 1.1e-07 62.8 111 53.2
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.1e-07 62.8 194 35.6
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.9e-07 62.0 281 28.8
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 1.9e-07 62.0 625 26.2
BcaB05g21948 Brassica carinata HOM05D000139 ORTHO05D000103 2.4e-07 61.6 83 47.0
C09p27570 Brassica napus HOM05D019620 ORTHO05D024594 2.1e-06 58.5 121 43.8
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 7.9e-06 56.6 365 24.7


User provided reference genes

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