Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 8.7e-243 844.0 715 100.0
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.0e-190 671.0 736 85.3
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 5.7e-186 655.2 726 85.7
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 7.7e-183 644.8 726 85.8
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 6.3e-177 625.2 726 84.4
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 5.8e-170 602.1 714 84.6
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.8e-155 553.9 715 77.8
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 2.4e-152 543.5 714 76.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.6e-151 540.8 739 77.5
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.1e-151 540.4 716 76.3
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 2.5e-149 533.5 713 75.7
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 4.3e-149 532.7 715 75.7
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 5.2e-147 525.8 721 74.6
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 4.6e-135 486.1 713 72.7
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 4.2e-104 383.3 633 74.6
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.6e-103 379.8 657 72.5
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 3.9e-102 376.7 657 72.3
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.5e-101 374.8 719 67.6
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.5e-101 374.0 626 74.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.3e-101 373.6 650 71.8
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.7e-100 371.3 719 65.2
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 8.2e-100 369.0 617 75.0
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.8e-99 367.9 707 63.4
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 3.1e-99 367.1 628 73.6
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.1e-99 367.1 626 74.0
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 3.1e-99 367.1 685 69.6
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 3.1e-99 367.1 628 73.7
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 6.9e-99 365.9 626 74.3
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.9e-99 365.9 672 70.2
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 9.1e-99 365.5 680 69.0
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.2e-98 365.2 625 65.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.5e-98 364.8 703 68.1
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.5e-98 364.8 684 69.0
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 2.0e-98 364.4 719 66.8
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 2.6e-98 364.0 676 69.7
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.5e-98 363.2 675 69.8
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.3e-97 361.7 724 65.9
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 2.2e-97 360.9 631 68.1
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 6.5e-97 359.4 678 70.2
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 8.5e-97 359.0 631 72.7
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 1.4e-96 358.2 692 69.4
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 6.3e-92 342.8 679 67.3
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.8e-91 341.3 710 65.4
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.8e-91 341.3 623 70.3
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.1e-91 340.1 670 69.0
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 3.5e-90 337.0 634 70.8
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 3.8e-89 333.6 659 68.6
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.1e-88 332.0 661 69.1
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 2.5e-88 330.9 704 65.8
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.1e-87 327.8 652 68.1
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 4.7e-87 326.6 569 75.9
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.7e-87 326.6 656 68.0
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 8.0e-87 325.9 626 71.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 8.0e-87 325.9 630 71.0
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 8.0e-87 325.9 608 72.5
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.0e-86 325.5 691 66.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.3e-86 324.3 625 69.9
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.1e-85 322.0 689 63.1
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 5.7e-85 319.7 625 70.4
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 6.3e-84 316.2 711 63.6
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.4e-83 315.1 704 63.4
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-83 314.3 712 63.8
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 7.7e-82 309.3 316 53.2
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.3e-81 308.5 657 66.7
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.3e-81 308.5 704 59.8
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.3e-81 308.5 652 68.3
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.2e-81 307.8 636 70.0
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.9e-81 307.4 696 65.2
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 4.2e-80 303.5 727 57.9
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 7.2e-80 302.8 667 66.1
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.7e-79 300.8 618 68.8
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 3.6e-79 300.4 629 68.4
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.1e-79 299.7 360 45.6
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 8.0e-79 299.3 662 66.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 8.0e-79 299.3 642 68.2
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 8.8e-78 295.8 653 66.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.0e-77 294.7 618 69.4
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 9.7e-77 292.4 412 66.5
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 2.2e-76 291.2 621 68.6
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 8.3e-76 289.3 623 66.0
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.8e-75 288.1 703 62.4
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 2.7e-74 284.3 278 52.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 6.5e-73 279.6 677 64.8
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 4.2e-72 276.9 310 48.1
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 9.4e-72 275.8 636 66.7
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.2e-71 275.4 623 66.6
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.6e-71 275.0 620 67.4
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 8.0e-71 272.7 498 80.5
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.0e-70 272.3 562 67.4
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 4.4e-69 266.9 714 57.3
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.7e-68 265.0 412 64.8
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-67 261.9 358 42.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.0e-61 241.5 359 40.9
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.4e-61 240.7 607 65.9
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 5.7e-61 240.0 199 56.8
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 5.9e-58 229.9 398 61.6
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 3.9e-49 200.7 344 58.1
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 2.8e-47 194.5 485 75.9
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.1e-43 182.6 503 70.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 1.0e-41 176.0 545 64.6
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.6e-40 170.2 502 71.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 4.4e-29 134.0 120 53.3
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 9.9e-29 132.9 239 78.7
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 3.0e-25 121.3 215 29.8
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.5e-24 119.0 196 32.1
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 2.8e-23 114.8 83 67.5
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.4e-22 111.7 84 70.2
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 5.3e-22 110.5 76 71.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.3e-20 105.9 173 37.6
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.2e-20 105.1 78 67.9
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 6.4e-20 103.6 191 29.8
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.4e-14 85.9 62 71.0
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.4e-14 85.9 78 59.0
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 4.2e-11 74.3 178 24.7
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 7.1e-11 73.6 178 24.2
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 2.3e-09 68.6 178 23.6
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 6.7e-09 67.0 180 23.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 8.7e-09 66.6 162 36.4
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 8.7e-09 66.6 178 23.6
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 4.3e-08 64.3 48 64.6
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 7.4e-08 63.5 178 23.0
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 1.6e-07 62.4 223 25.6
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 2.1e-07 62.0 179 24.6
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 2.1e-07 62.0 178 22.5
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.8e-07 60.8 268 19.4
FAN12G3026 Fragaria x ananassa HOM05D003056 ORTHO05D003422 4.8e-07 60.8 178 22.5
AagrBONN_evm.TU.Sc2ySwM_362.433 Anthoceros agrestis HOM05D003056 ORTHO05D038402 8.1e-07 60.1 130 27.7
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 8.1e-07 60.1 58 53.4
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 8.1e-07 60.1 178 21.3
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 8.1e-07 60.1 179 22.9
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 8.1e-07 60.1 196 22.4
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 1.4e-06 59.3 223 24.7
PGR044G1733 Punica granatum HOM05D003056 ORTHO05D003422 2.4e-06 58.5 177 23.2
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 3.1e-06 58.2 178 21.9
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 3.1e-06 58.2 173 23.1
BcaNung06913 Brassica carinata HOM05D003056 ORTHO05D003422 4.0e-06 57.8 178 21.3
BolC3t18203H Brassica oleracea HOM05D003056 ORTHO05D003422 4.0e-06 57.8 178 21.3
BcaC02g11443 Brassica carinata HOM05D000001 ORTHO05D000003 6.9e-06 57.0 124 33.1
A06p33070 Brassica napus HOM05D003056 ORTHO05D003422 9.0e-06 56.6 178 20.8
C04p15490 Brassica napus HOM05D000001 ORTHO05D000003 9.0e-06 56.6 124 33.1
BolC4t23120H Brassica oleracea HOM05D000001 ORTHO05D000003 9.0e-06 56.6 124 33.1
BraA06t26237Z Brassica rapa HOM05D003056 ORTHO05D003422 9.0e-06 56.6 178 20.8


User provided reference genes

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