Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.4e-110 402.1 196 100.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 8.2e-26 121.3 163 46.0
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 8.2e-26 121.3 159 46.5
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-25 120.2 158 44.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.4e-25 119.8 165 45.5
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.0e-25 119.0 156 48.1
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.0e-25 119.0 160 46.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 5.3e-25 118.6 159 45.3
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 9.0e-25 117.9 159 45.9
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.0e-25 117.9 159 47.2
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.0e-25 117.9 159 47.2
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 9.0e-25 117.9 159 45.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 9.0e-25 117.9 159 45.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 1.2e-24 117.5 156 46.8
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-24 117.5 159 46.5
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.2e-24 117.5 161 46.0
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.5e-24 117.1 130 48.5
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.5e-24 117.1 159 45.3
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 2.0e-24 116.7 159 45.9
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.0e-24 116.7 157 47.1
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.0e-24 116.7 157 47.1
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.0e-24 116.7 158 44.9
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 2.0e-24 116.7 157 47.1
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.6e-24 116.3 157 45.2
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.6e-24 116.3 157 45.9
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.6e-24 116.3 186 41.4
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 2.6e-24 116.3 163 45.4
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.6e-24 116.3 155 45.8
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 3.4e-24 115.9 158 43.7
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 3.4e-24 115.9 159 44.7
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 3.4e-24 115.9 155 46.5
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 3.4e-24 115.9 155 46.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.5e-24 115.5 165 44.8
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.5e-24 115.5 163 44.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.5e-24 115.5 160 45.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 5.8e-24 115.2 193 40.9
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 7.6e-24 114.8 159 44.7
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 7.6e-24 114.8 156 45.5
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.6e-24 114.8 157 45.2
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.0e-23 114.4 159 44.7
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.0e-23 114.4 156 46.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-23 114.4 157 44.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.0e-23 114.4 165 44.2
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.3e-23 114.0 159 46.5
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.3e-23 114.0 157 44.6
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.3e-23 114.0 157 45.9
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.7e-23 113.6 159 45.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.2e-23 113.2 157 43.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.2e-23 113.2 164 43.3
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.2e-23 113.2 156 44.9
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.2e-23 113.2 159 45.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.9e-23 112.8 158 43.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.9e-23 112.8 157 43.9
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.9e-23 112.8 158 43.0
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.9e-23 112.8 158 43.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.9e-23 112.8 159 45.9
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 2.9e-23 112.8 158 43.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 2.9e-23 112.8 156 45.5
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 43.9
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 3.8e-23 112.5 157 45.2
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 3.8e-23 112.5 155 43.9
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.9e-23 112.1 158 42.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.9e-23 112.1 158 42.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 4.9e-23 112.1 157 43.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.9e-23 112.1 157 43.9
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 4.9e-23 112.1 158 43.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 4.9e-23 112.1 155 43.9
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.9e-23 112.1 155 43.9
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 6.5e-23 111.7 157 43.9
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.5e-23 111.7 158 41.8
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.5e-23 111.7 159 45.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 6.5e-23 111.7 159 44.7
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 6.5e-23 111.7 155 46.5
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 8.4e-23 111.3 157 45.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 8.4e-23 111.3 156 43.6
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-22 110.9 156 43.6
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.1e-22 110.9 159 43.4
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.1e-22 110.9 157 44.6
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.9e-22 110.2 156 44.2
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.9e-22 110.2 157 44.6
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.2e-22 109.4 157 43.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 3.2e-22 109.4 157 43.3
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.2e-22 109.4 157 43.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.2e-22 109.4 155 42.6
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.5e-22 108.6 51 86.3
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.5e-22 108.6 158 41.8
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 7.1e-22 108.2 155 41.9
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 7.1e-22 108.2 153 45.8
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-21 107.1 50 88.0
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 1.6e-21 107.1 50 88.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.6e-21 107.1 153 44.4
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.6e-21 107.1 156 42.9
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.6e-21 107.1 50 88.0
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.6e-21 107.1 156 42.3
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.6e-21 107.1 50 88.0
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.1e-21 106.7 156 44.2
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.1e-21 106.7 156 42.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.7e-21 106.3 48 93.8
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.7e-21 106.3 156 42.3
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 2.7e-21 106.3 56 82.1
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.7e-21 106.3 48 93.8
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 4.6e-21 105.5 50 86.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.0e-21 105.1 50 84.0
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 7.9e-21 104.8 155 43.9
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.0e-20 104.4 56 78.6
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-20 104.4 48 89.6
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.0e-20 104.4 155 41.9
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.3e-20 104.0 156 43.6
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.1e-20 102.1 187 40.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 8.7e-20 101.3 155 41.9
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 5.7e-19 98.6 65 72.3
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 5.7e-19 98.6 57 78.9
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.7e-18 95.9 154 39.6
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-17 94.4 144 41.0
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 4.1e-17 92.4 154 39.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.9e-17 91.7 50 76.0
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.6e-16 89.7 80 56.2
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 4.5e-16 89.0 47 72.3
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.0e-15 87.8 161 39.1
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.3e-15 87.4 147 40.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.3e-15 87.4 51 66.7
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.3e-15 87.4 47 72.3
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 8.5e-15 84.7 45 75.6
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.1e-14 84.3 126 41.3
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.5e-14 83.2 142 39.4
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.9e-13 78.2 76 57.9
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.0e-12 77.8 46 65.2
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.3e-11 72.8 47 68.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 9.7e-11 71.2 47 68.1
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.2e-08 64.3 43 65.1
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.3e-07 60.8 34 70.6
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-06 57.8 81 42.0


User provided reference genes

Program Settings