Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.1e-304 1047.7 556 100.0
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.6e-215 753.1 579 73.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.6e-214 747.3 638 67.2
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.4e-194 681.8 613 66.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.9e-167 591.3 616 60.1
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.1e-163 580.9 598 61.5
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.9e-163 578.2 594 60.9
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-162 577.4 601 60.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.5e-160 569.7 601 60.2
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 3.9e-158 562.4 585 61.2
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-154 550.8 595 59.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.0e-105 388.3 586 47.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.8e-101 371.7 647 44.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.1e-99 366.3 600 45.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.1e-96 358.2 636 43.9
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.9e-96 357.5 638 43.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 9.5e-96 355.1 592 45.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 9.5e-96 355.1 592 45.8
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.1e-95 352.1 638 42.5
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.3e-94 350.5 635 44.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 4.0e-94 349.7 618 45.0
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-85 321.6 584 44.2
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 9.0e-78 295.4 722 37.5
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-75 288.1 691 37.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.4e-75 287.3 580 40.5
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.0e-73 282.0 686 38.0
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.6e-71 273.5 688 38.2
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 4.0e-70 270.0 669 37.2
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 2.7e-66 257.3 668 37.3
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.4e-64 249.2 513 40.5
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.8e-62 244.6 657 35.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.1e-51 206.1 746 31.2
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.9e-45 186.4 581 33.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.0e-44 183.3 614 33.2
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 4.2e-43 180.3 678 30.2
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 6.1e-42 176.4 739 30.0
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.1e-42 176.4 607 32.8
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.4e-41 175.3 789 30.4
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.8e-39 166.8 583 32.2
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.8e-38 164.9 352 39.5
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 9.1e-38 162.5 607 31.8
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.9e-37 159.8 696 28.6
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.2e-35 154.1 380 35.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 7.2e-35 152.9 590 31.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.1e-34 151.4 620 30.3
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 3.6e-34 150.6 372 35.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 3.0e-33 147.5 629 28.8
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 6.7e-33 146.4 624 30.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 6.7e-33 146.4 540 31.5
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.7e-33 146.4 755 29.0
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-32 145.6 628 29.9
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-32 145.6 628 29.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.5e-32 145.2 453 31.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.5e-32 145.2 588 29.4
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.0e-32 144.8 348 37.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.0e-32 144.8 631 30.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.4e-32 143.7 454 33.0
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-31 142.1 598 29.3
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.2e-31 141.4 368 33.7
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.3e-31 139.8 380 35.3
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 4.1e-30 137.1 610 29.8
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.0e-29 134.8 370 34.6
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 1.7e-28 131.7 451 29.7
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-28 131.3 625 29.1
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 8.5e-28 129.4 560 29.5
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.5e-27 127.9 476 31.1
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.2e-27 127.1 642 29.6
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.7e-26 124.4 553 29.7
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 2.3e-25 121.3 665 26.9
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 6.7e-25 119.8 621 28.2
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 8.8e-25 119.4 685 29.5
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-24 119.0 539 29.3
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.5e-24 118.6 772 25.1
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.5e-24 118.6 408 31.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-24 117.9 515 29.1
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.2e-23 114.8 623 26.2
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.2e-23 114.8 448 28.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.8e-23 113.6 604 27.2
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 4.8e-23 113.6 619 28.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.1e-22 110.9 263 34.2
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-22 110.5 604 28.5
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-22 110.5 636 27.7
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 7.0e-22 109.8 282 36.2
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 7.0e-22 109.8 524 26.9
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 9.1e-22 109.4 451 27.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.6e-21 107.8 526 28.7
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.7e-21 106.3 627 27.4
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 7.7e-21 106.3 87 67.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.3e-20 105.5 554 28.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.3e-20 105.5 590 28.0
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.7e-20 105.1 556 29.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.8e-20 104.0 663 27.6
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 8.5e-20 102.8 314 31.8
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.1e-19 102.4 87 65.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.5e-19 102.1 420 28.8
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.2e-19 100.9 116 55.2
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 5.5e-19 100.1 282 34.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 7.2e-19 99.8 284 32.0
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 9.4e-19 99.4 343 30.3
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 9.4e-19 99.4 338 30.8
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.2e-18 99.0 494 28.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.6e-18 98.6 437 27.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.1e-18 98.2 462 27.3
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.6e-18 97.4 420 29.3
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.8e-17 95.1 233 38.2
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 2.3e-17 94.7 426 26.5
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 4.0e-17 94.0 519 26.8
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 6.7e-17 93.2 510 29.0
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 6.7e-17 93.2 451 28.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.0e-16 91.7 540 28.1
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.0e-16 91.7 445 27.2
BolC3t14506H Brassica oleracea HOM05D026065 ORTHO05D019960 5.7e-16 90.1 237 38.0
BolC2t10446H Brassica oleracea HOM05D026065 ORTHO05D019960 7.5e-16 89.7 234 38.5
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.7e-15 88.6 524 27.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.7e-15 88.6 239 36.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.3e-15 86.7 691 26.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 6.3e-15 86.7 380 29.7
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 8.2e-15 86.3 234 32.5
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 1.4e-14 85.5 427 26.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.4e-14 85.5 316 32.9
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 3.1e-14 84.3 228 33.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.1e-14 84.0 234 31.6
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 5.3e-14 83.6 393 27.0
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 7.0e-14 83.2 476 25.4
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 9.1e-14 82.8 116 43.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 9.1e-14 82.8 293 29.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.2e-13 82.4 539 27.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.3e-12 79.0 570 25.3
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.3e-12 79.0 579 28.5
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.7e-12 78.6 623 25.5
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.2e-12 78.2 329 28.0
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-11 75.9 265 27.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.9e-11 75.1 420 26.7
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.2e-11 74.3 187 34.2
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.2e-11 73.9 267 30.0
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.2e-11 73.9 217 32.3
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 5.5e-11 73.6 447 25.1
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.4e-11 72.8 164 41.5
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 9.4e-11 72.8 273 29.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 9.4e-11 72.8 427 25.1
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.6e-10 72.0 416 26.4
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.6e-10 72.0 136 38.2
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 6.1e-10 70.1 224 31.7
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 1.0e-09 69.3 157 35.7
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 1.8e-09 68.6 286 29.0
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.8e-09 68.6 193 32.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 6.8e-09 66.6 560 25.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.5e-08 65.5 218 31.7
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.5e-08 65.5 203 33.0
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 3.4e-08 64.3 577 23.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 4.4e-08 63.9 536 26.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 4.4e-08 63.9 212 26.9
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 7.5e-08 63.2 486 26.1
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.3e-07 62.4 251 30.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.7e-07 60.8 128 39.8
BcaB05g23591 Brassica carinata HOM05D023865 ORTHO05D019960 4.8e-07 60.5 105 43.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.8e-07 60.5 537 23.8
BcaB06g26292 Brassica carinata HOM05D023865 ORTHO05D019960 2.4e-06 58.2 145 37.2
BcaNung06066 Brassica carinata HOM05D023865 ORTHO05D019960 2.4e-06 58.2 145 37.2
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 4.1e-06 57.4 635 23.0
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.4e-06 57.0 733 24.7
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 5.4e-06 57.0 167 28.7


User provided reference genes

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