Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 0.0e+00 1172.9 679 100.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-292 1009.6 679 85.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 7.4e-292 1006.9 675 87.1
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.4e-282 976.1 682 84.0
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.3e-277 958.7 679 83.4
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 5.3e-274 947.6 682 79.5
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.2e-273 946.4 680 83.8
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 5.5e-271 937.6 685 82.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.9e-269 931.4 685 81.5
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 5.1e-269 931.0 685 81.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 6.7e-269 930.6 685 82.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-268 929.1 680 83.7
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 7.4e-268 927.2 680 80.7
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-265 919.8 680 80.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 4.5e-265 917.9 685 81.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 7.9e-262 907.1 685 79.9
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-231 806.6 690 68.7
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 9.8e-220 767.3 688 70.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.3e-219 766.9 555 81.4
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 7.8e-217 757.7 690 70.6
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.4e-195 684.9 711 60.6
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.3e-191 672.5 707 58.7
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.4e-186 657.1 699 63.1
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 5.3e-173 612.1 701 53.1
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.3e-173 612.1 699 60.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-172 610.5 704 59.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.0e-171 607.8 699 60.1
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.2e-170 602.4 698 59.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.7e-169 599.7 704 60.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.8e-168 597.0 698 58.9
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.1e-167 594.3 709 56.6
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.5e-167 594.0 698 58.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 4.3e-167 592.4 705 58.9
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 4.0e-165 585.9 704 55.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 3.4e-164 582.8 699 56.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.2e-163 580.1 698 56.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.2e-163 580.1 704 55.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.2e-162 576.2 704 58.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 9.3e-162 574.7 702 57.3
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.2e-154 549.7 694 53.5
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.6e-153 547.4 710 56.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 5.1e-152 542.3 708 51.6
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.8e-152 541.6 713 56.7
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.5e-151 540.0 705 53.3
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.2e-150 537.0 706 54.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.7e-150 536.2 705 53.9
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.3e-150 535.4 708 48.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.5e-148 530.8 703 51.4
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.6e-148 530.0 703 55.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 7.7e-148 528.5 702 56.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.0e-147 528.1 701 53.4
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.1e-146 524.6 711 53.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-146 524.2 725 50.6
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.5e-146 523.5 702 55.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.2e-146 522.7 701 54.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.2e-145 521.2 699 55.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.6e-145 519.6 706 52.4
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-144 516.2 756 46.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.1e-144 515.8 699 54.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.6e-143 513.5 715 53.3
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.3e-143 513.1 706 49.7
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 9.7e-143 511.5 695 54.7
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 9.7e-143 511.5 700 48.0
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 8.2e-142 508.4 701 53.5
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 5.3e-141 505.8 710 51.1
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.2e-140 504.6 713 50.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.5e-140 503.1 743 48.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.0e-139 501.5 705 50.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 6.5e-139 498.8 672 54.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.1e-138 498.0 714 50.4
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.9e-138 497.3 705 49.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 3.2e-138 496.5 700 47.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 9.4e-138 495.0 700 51.6
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.1e-137 493.8 703 52.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.3e-136 490.3 703 51.2
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 8.8e-136 488.4 631 59.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 3.3e-135 486.5 707 53.7
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.3e-134 484.6 767 40.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.3e-134 484.6 703 51.2
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.8e-134 483.4 695 52.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 6.3e-134 482.3 699 51.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.1e-133 479.6 704 51.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 5.3e-133 479.2 705 51.9
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 9.1e-133 478.4 704 50.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.2e-132 478.0 732 50.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.0e-132 477.2 705 51.2
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 7.7e-132 475.3 694 52.0
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.2e-131 473.8 707 51.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.2e-131 473.8 705 48.5
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.9e-131 473.4 704 52.0
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.9e-131 473.4 700 50.0
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.5e-130 471.1 638 56.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 2.1e-129 467.2 710 53.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 8.0e-129 465.3 705 52.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.8e-128 464.2 727 50.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.5e-127 458.8 707 50.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 6.3e-126 455.7 632 55.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 5.9e-124 449.1 699 52.8
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.9e-123 446.8 697 51.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.3e-120 437.2 711 49.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.3e-115 421.4 702 43.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.0e-115 419.5 702 39.2
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.1e-114 418.3 694 40.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.6e-113 414.5 467 62.3
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.1e-113 414.1 631 54.7
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.0e-109 399.1 708 44.9
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.8e-108 395.6 695 41.2
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.6e-105 387.9 696 38.2
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 3.6e-105 386.7 705 38.9
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.2e-105 386.0 538 42.8
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.0e-100 370.9 625 51.2
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 3.0e-99 367.1 520 52.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.2e-97 361.7 687 40.0
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-96 357.8 524 46.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-92 343.6 513 52.4
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.6e-89 334.7 521 50.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.3e-75 288.5 703 41.7
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.5e-74 284.3 526 39.4
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.3e-73 282.0 459 43.4
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-73 282.0 534 36.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 9.6e-66 255.8 418 50.7
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-65 255.0 267 66.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 9.9e-63 245.7 254 73.6
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.5e-58 231.9 321 50.8
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-55 221.5 472 34.5
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-51 208.8 465 34.6
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.8e-51 208.4 124 83.9
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.3e-51 208.0 338 40.2
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-49 200.7 431 34.3
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.1e-48 199.1 251 54.2
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 4.1e-48 197.2 122 80.3
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 6.7e-43 179.9 194 52.6
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.6e-41 175.3 700 30.4
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 6.9e-40 169.9 132 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.7e-38 165.2 548 28.1
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.2e-36 159.1 272 47.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 7.9e-36 156.4 134 64.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 3.1e-32 144.4 118 67.8
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-31 142.5 121 62.0
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.9e-30 137.9 122 56.6
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 5.0e-30 137.1 513 30.8
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.1e-27 127.1 189 46.6
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.1e-24 119.4 122 48.4
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.8e-24 118.6 109 56.9
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.9e-23 113.6 156 51.3
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.1e-21 109.4 197 47.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-20 105.9 98 61.2
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.6e-20 105.5 141 54.6
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-19 99.8 94 60.6
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 5.7e-18 97.1 70 67.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.2e-14 85.1 137 41.6
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 1.1e-13 82.8 286 27.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 6.1e-12 77.0 152 36.2
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.0e-11 76.3 246 27.2
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-11 75.1 102 39.2
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-11 75.1 102 39.2
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.8e-11 73.6 99 39.4
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 8.8e-11 73.2 50 60.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-10 71.6 58 65.5
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 3.4e-10 71.2 256 24.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 7.5e-10 70.1 123 33.3
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-10 69.7 58 63.8
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-10 69.7 58 63.8
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-10 69.7 58 65.5
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-10 69.7 58 63.8
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-09 69.3 101 36.6
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.7e-09 68.9 99 39.4
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-09 68.2 58 62.1
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.1e-08 66.2 75 45.3
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-08 65.9 102 35.3
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 7.0e-08 63.5 29 93.1
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.1e-08 63.2 102 33.3
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-07 62.4 102 33.3
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.6e-07 62.4 72 45.8
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-06 59.7 102 33.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 6.5e-06 57.0 142 37.3


User provided reference genes

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