Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.8e-160 568.5 285 100.0
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.3e-136 487.6 280 86.1
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 4.5e-134 481.5 280 84.6
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.0e-133 480.3 280 84.6
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 5.5e-132 474.6 280 82.9
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.7e-131 471.5 268 86.6
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.3e-130 469.2 266 86.8
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.8e-130 467.2 266 86.5
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.0e-125 453.8 267 84.3
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.0e-125 453.8 267 84.3
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 6.5e-125 451.1 267 83.9
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-124 450.3 268 82.1
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-124 449.5 268 81.7
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 5.5e-124 448.0 267 83.1
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 5.5e-124 448.0 267 81.6
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 9.4e-124 447.2 268 81.3
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 9.4e-124 447.2 268 81.3
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.6e-123 445.3 285 77.2
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-119 433.3 273 78.8
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.4e-119 432.6 269 78.4
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.0e-117 427.2 283 74.2
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.3e-117 426.8 283 73.9
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.3e-117 426.0 280 74.6
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 6.5e-117 424.5 283 73.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-116 423.7 278 74.8
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.3e-116 422.2 278 75.9
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 3.3e-116 422.2 279 74.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 3.3e-116 422.2 283 72.4
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 4.2e-116 421.8 283 72.4
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 4.2e-116 421.8 283 72.4
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.2e-115 420.2 282 72.3
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.2e-115 420.2 285 73.0
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.1e-115 419.5 278 74.8
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.8e-115 419.1 277 73.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.8e-115 419.1 278 74.5
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.8e-115 419.1 280 75.0
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.8e-115 419.1 280 75.0
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 6.1e-115 417.9 280 74.3
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.8e-114 416.4 273 74.4
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 5.2e-114 414.8 278 72.3
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 5.2e-114 414.8 278 73.4
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 6.8e-114 414.5 278 71.9
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 8.9e-114 414.1 266 76.7
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 8.9e-114 414.1 267 75.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 8.9e-114 414.1 280 73.2
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.2e-113 413.7 268 75.0
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.2e-113 413.7 277 74.0
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.0e-113 412.9 275 73.1
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.6e-113 412.5 283 70.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.6e-113 412.5 275 72.7
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.4e-113 412.1 277 73.6
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.4e-113 411.8 280 71.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 4.4e-113 411.8 277 73.6
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 5.7e-113 411.4 278 73.0
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 7.5e-113 411.0 286 71.7
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 7.5e-113 411.0 286 72.0
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 9.8e-113 410.6 282 71.6
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.3e-112 410.2 265 75.8
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.2e-112 409.5 278 73.4
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.8e-112 409.1 267 75.3
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.8e-112 409.1 278 72.3
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.7e-112 408.7 277 72.9
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.7e-112 408.7 277 72.9
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.7e-112 408.7 279 72.4
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 3.7e-112 408.7 283 70.0
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 6.3e-112 407.9 265 74.7
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.3e-112 407.9 277 72.9
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 6.3e-112 407.9 279 69.9
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.3e-112 407.5 284 70.1
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 8.3e-112 407.5 279 72.4
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 8.3e-112 407.5 275 72.7
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 8.3e-112 407.5 284 70.4
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.1e-111 407.1 266 74.4
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.1e-111 407.1 286 70.3
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.4e-111 406.8 265 74.3
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.4e-111 406.8 282 70.9
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-111 406.4 284 70.4
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.8e-111 406.4 279 71.3
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.8e-111 406.4 282 69.9
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.4e-111 406.0 265 74.7
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 5.4e-111 404.8 274 71.2
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.0e-111 404.4 278 70.9
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 7.0e-111 404.4 282 70.2
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 7.0e-111 404.4 270 75.2
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 9.2e-111 404.1 274 73.0
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.6e-110 403.3 277 70.8
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.6e-110 403.3 268 75.0
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.6e-110 403.3 268 74.6
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-110 402.9 265 73.6
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.0e-110 402.9 277 69.7
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.7e-110 402.5 267 75.3
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.7e-110 402.5 276 70.3
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.5e-110 402.1 268 73.5
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 3.5e-110 402.1 318 64.8
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 4.5e-110 401.7 285 70.2
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.5e-110 401.7 281 69.8
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.8e-110 401.0 278 69.4
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.0e-109 400.6 266 72.9
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 2.3e-109 399.4 270 73.0
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 2.9e-109 399.1 282 70.2
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.1e-108 397.1 273 70.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.9e-108 396.4 276 69.6
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 2.5e-108 396.0 264 74.6
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 3.3e-108 395.6 284 67.3
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 4.3e-108 395.2 278 68.7
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 7.3e-108 394.4 283 68.9
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.2e-107 393.7 283 68.6
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.6e-107 393.3 284 68.0
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.1e-107 392.9 285 69.8
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.8e-107 392.5 279 68.5
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.6e-107 392.1 285 69.5
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 3.6e-107 392.1 268 69.0
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.7e-107 391.7 269 72.1
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.7e-107 391.7 279 68.8
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 6.1e-107 391.3 276 67.8
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 6.1e-107 391.3 284 66.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 8.0e-107 391.0 285 69.8
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.0e-106 389.0 283 67.8
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.0e-105 386.3 269 70.6
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.0e-105 386.3 269 70.6
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 2.0e-105 386.3 286 67.5
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 2.6e-105 386.0 288 65.6
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 5.8e-105 384.8 265 69.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.7e-104 382.1 294 63.9
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.4e-103 380.2 299 65.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.4e-103 380.2 268 67.2
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.2e-103 379.0 283 65.7
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.1e-103 378.6 264 69.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.2e-102 377.1 267 67.4
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.6e-102 376.7 254 71.3
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.6e-102 376.7 284 64.8
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.7e-102 375.9 297 63.0
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 6.0e-102 374.8 284 62.7
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.0e-101 374.0 299 63.5
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.7e-101 373.2 284 63.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 6.6e-101 371.3 291 63.2
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.1e-100 370.5 284 63.0
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 8.0e-99 364.4 271 65.7
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 5.2e-98 361.7 273 63.7
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.7e-96 356.7 259 66.8
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 3.7e-96 355.5 230 75.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.4e-95 353.6 245 70.6
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.0e-93 347.4 317 58.0
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.7e-93 346.7 280 62.1
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.5e-92 343.6 274 62.4
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.5e-89 333.6 207 81.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.9e-84 316.6 278 55.8
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.9e-79 300.1 285 54.4
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 8.4e-72 274.6 281 45.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.5e-68 263.8 235 58.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.5e-68 263.1 185 64.3
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 7.4e-52 208.4 185 53.5
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 5.5e-47 192.2 142 69.0
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 5.1e-45 185.7 314 35.7
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 3.3e-44 183.0 202 50.5
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 8.2e-43 178.3 132 70.5
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 4.5e-41 172.6 109 76.1
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.6e-33 146.7 117 58.1
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 6.5e-32 142.1 289 33.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 3.3e-28 129.8 95 64.2
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.7e-24 117.5 77 72.7
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.9e-24 116.7 100 59.0
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.8e-24 116.3 77 72.7
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.8e-24 116.3 77 72.7
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.6e-22 110.9 99 57.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 6.1e-22 109.0 292 29.1
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 4.8e-19 99.4 98 55.1
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 6.3e-19 99.0 104 49.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 7.0e-18 95.5 86 54.7
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 7.0e-18 95.5 86 54.7
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.1e-14 84.0 134 42.5
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 8.0e-14 82.0 69 47.8
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 5.0e-08 62.8 53 56.6
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.5e-07 61.2 47 59.6


User provided reference genes

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