Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.2e-198 694.5 353 100.0
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.1e-161 573.5 369 81.3
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.4e-161 573.2 368 82.3
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 1.0e-159 567.0 368 80.7
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.5e-158 563.1 369 81.0
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.3e-158 561.6 368 81.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 2.3e-156 555.8 368 79.1
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 2.3e-156 555.8 368 79.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 4.0e-156 555.1 368 79.3
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 8.9e-156 553.9 368 79.1
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 8.9e-156 553.9 368 79.1
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.5e-155 553.1 368 79.1
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.3e-154 550.1 357 79.3
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 9.2e-153 543.9 369 77.2
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.7e-151 539.7 351 80.9
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 9.2e-137 490.7 370 72.4
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.2e-128 463.8 300 80.3
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 3.1e-116 422.5 374 61.2
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 7.6e-115 417.9 365 62.2
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.4e-113 411.8 374 59.6
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 7.1e-113 411.4 374 60.7
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 7.1e-113 411.4 374 61.0
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 9.3e-113 411.0 371 59.6
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.2e-112 410.6 374 60.4
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.6e-112 410.2 368 61.7
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 2.7e-112 409.5 369 60.4
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.5e-112 409.1 375 59.7
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.1e-110 404.1 374 58.6
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.1e-110 404.1 368 59.2
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-110 403.7 368 60.3
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 5.6e-110 401.7 374 59.4
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.3e-109 400.6 370 59.7
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.3e-109 400.6 381 58.0
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-109 400.6 368 61.1
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 8.1e-109 397.9 370 57.8
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.4e-108 396.4 371 59.3
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 6.9e-108 394.8 374 58.3
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 1.5e-107 393.7 369 59.3
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 9.9e-107 391.0 374 58.6
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 9.9e-107 391.0 368 58.2
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-106 390.6 368 59.5
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.9e-106 389.4 364 58.2
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 4.9e-106 388.7 364 58.0
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 6.4e-106 388.3 393 56.2
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.4e-105 387.1 374 57.2
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.4e-105 386.3 368 57.6
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.2e-105 386.0 368 57.3
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 3.2e-105 386.0 368 57.1
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 5.5e-105 385.2 368 58.4
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 5.5e-105 385.2 374 57.5
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 9.3e-105 384.4 376 55.6
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 9.3e-105 384.4 374 57.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.2e-104 384.0 376 57.7
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 3.5e-104 382.5 371 57.7
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.6e-104 382.1 368 57.3
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.0e-104 381.7 379 56.2
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 7.9e-104 381.3 374 56.7
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.3e-103 380.6 337 65.9
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.8e-103 380.2 374 56.4
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.9e-103 379.0 374 56.1
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.5e-102 377.1 374 55.9
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.5e-102 377.1 435 50.8
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.9e-102 376.7 433 51.7
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 3.3e-102 375.9 369 55.3
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 2.8e-101 372.9 361 57.6
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 6.2e-101 371.7 363 56.2
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 4.0e-100 369.0 374 54.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 5.3e-100 368.6 370 54.6
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 6.9e-100 368.2 345 58.0
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.2e-99 367.5 363 55.1
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.0e-99 366.7 370 56.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.0e-98 364.4 369 53.4
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.0e-98 364.4 365 54.5
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.2e-98 363.2 376 54.3
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 2.2e-98 363.2 368 54.1
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 2.9e-98 362.8 371 56.1
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.9e-98 362.1 374 53.5
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 4.9e-98 362.1 399 52.4
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 6.5e-98 361.7 374 54.3
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 8.4e-98 361.3 359 58.2
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 8.4e-98 361.3 362 54.7
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 1.1e-97 360.9 370 54.6
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 2.5e-97 359.8 368 56.5
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 3.2e-97 359.4 398 51.5
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 5.5e-97 358.6 367 54.0
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.2e-96 357.5 363 54.5
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.6e-96 357.1 368 55.2
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 2.7e-96 356.3 369 53.7
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 7.9e-96 354.8 366 54.1
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.3e-95 353.2 373 53.1
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.3e-95 353.2 397 50.6
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.5e-94 350.5 369 53.4
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 4.3e-94 349.0 373 51.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 9.6e-94 347.8 375 53.9
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.8e-92 343.6 405 49.9
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 4.1e-92 342.4 362 52.8
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.4e-91 339.3 344 55.5
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 2.2e-90 336.7 369 52.0
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.9e-90 336.3 377 52.8
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 6.5e-90 335.1 368 55.2
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 8.5e-90 334.7 388 52.3
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.7e-87 325.1 367 50.1
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 6.7e-87 325.1 368 52.2
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 5.7e-86 322.0 371 52.3
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 4.8e-85 318.9 391 49.4
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.1e-84 317.8 373 50.7
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 9.1e-84 314.7 299 57.5
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 3.2e-81 306.2 369 49.9
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 4.6e-80 302.4 270 61.9
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.5e-75 285.8 380 46.8
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.9e-75 285.4 330 50.9
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 5.0e-74 282.3 361 45.4
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.5e-73 278.9 311 50.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.3e-69 267.7 367 43.3
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.8e-69 266.5 371 41.2
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.0e-66 258.1 247 57.9
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.5e-59 232.6 218 58.3
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 8.5e-58 228.4 218 57.8
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.5e-57 227.6 359 39.8
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 4.2e-57 226.1 213 57.7
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 3.6e-56 223.0 240 50.4
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 3.7e-53 213.0 279 45.2
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 6.3e-53 212.2 177 64.4
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.0e-52 208.8 207 54.6
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.9e-49 200.7 170 61.8
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 7.2e-49 198.7 175 60.6
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 3.6e-48 196.4 238 50.8
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.7e-46 189.1 287 42.2
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.2e-45 187.2 334 40.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 6.3e-45 185.7 296 42.6
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.4e-44 183.7 129 71.3
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.4e-44 182.6 129 69.8
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 9.2e-44 181.8 228 48.7
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.7e-42 177.6 131 69.5
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.7e-40 169.5 292 39.0
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.6e-38 163.7 299 38.5
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.7e-34 151.0 165 50.9
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 4.3e-33 146.4 262 43.1
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.7e-32 142.9 137 57.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.0e-30 137.5 155 52.9
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.3e-29 134.8 92 71.7
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 9.2e-28 128.6 147 49.0
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.3e-23 114.0 120 46.7
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 2.6e-22 110.5 85 58.8
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 1.3e-21 108.2 179 39.7
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-20 103.2 114 46.5
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.2e-19 101.7 73 69.9
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 4.6e-19 99.8 174 40.8
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-17 95.1 65 67.7
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.4e-15 88.2 63 65.1
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.0e-15 86.7 73 60.3
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 8.9e-15 85.5 107 44.9
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 1.3e-13 81.6 51 84.3
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 1.3e-13 81.6 51 84.3
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.2e-13 80.9 116 42.2
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.8e-13 80.1 71 60.6
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 2.1e-08 64.3 56 57.1
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 2.8e-08 63.9 53 60.4
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 4.7e-08 63.2 56 55.4
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 8.1e-08 62.4 53 60.4
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.4e-07 61.6 55 60.0
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 1.4e-07 61.6 67 52.2
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 9.0e-07 58.9 185 26.5
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.5e-06 58.2 56 51.8
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.0e-06 57.8 45 62.2
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.4e-06 57.0 41 68.3
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 4.4e-06 56.6 45 62.2
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 7.6e-06 55.8 42 66.7
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 9.9e-06 55.5 52 55.8
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 9.9e-06 55.5 60 46.7


User provided reference genes

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