Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 8.2e-291 1003.0 521 100.0
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 5.7e-260 900.6 521 88.5
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 1.7e-259 899.0 521 88.7
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 5.0e-256 887.5 520 86.9
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 9.4e-255 883.2 520 87.9
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 2.3e-253 878.6 526 87.3
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 5.2e-253 877.5 520 86.3
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 8.8e-253 876.7 520 89.0
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 2.6e-252 875.2 520 86.5
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 7.2e-247 857.1 521 86.4
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 3.1e-242 841.6 520 83.8
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 2.7e-233 812.0 524 81.3
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 4.9e-211 738.0 536 72.9
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 4.8e-166 588.6 524 58.8
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 8.5e-163 577.8 524 60.1
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 9.4e-162 574.3 524 56.9
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 2.5e-159 566.2 521 56.8
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 9.7e-159 564.3 532 58.3
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 9.7e-159 564.3 529 56.0
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.3e-158 563.9 524 59.4
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 1.7e-158 563.5 547 54.3
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 3.4e-156 555.8 527 54.5
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 5.0e-155 552.0 553 55.3
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 1.1e-154 550.8 531 55.9
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.4e-154 550.4 467 59.5
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 3.2e-154 549.3 539 53.2
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 4.2e-154 548.9 521 56.0
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 5.5e-154 548.5 533 54.4
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 9.4e-154 547.7 522 58.8
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.0e-152 544.3 518 56.6
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 5.1e-152 542.0 531 55.2
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 6.7e-152 541.6 526 54.2
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.0e-151 540.0 531 55.4
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 5.7e-151 538.5 522 54.8
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 5.7e-151 538.5 528 55.1
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.8e-150 535.4 532 56.6
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 6.3e-150 535.0 522 55.9
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 1.5e-148 530.4 529 52.9
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 3.5e-148 529.3 537 54.4
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 7.7e-148 528.1 535 52.5
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.7e-147 526.9 524 53.4
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.7e-147 526.9 532 55.8
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.2e-147 526.6 487 57.5
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.5e-146 523.9 532 53.0
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.6e-145 519.2 529 52.7
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.7e-145 518.8 503 55.9
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 3.0e-144 516.2 524 53.2
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 5.2e-144 515.4 537 52.0
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 5.2e-144 515.4 477 57.9
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 6.7e-144 515.0 527 50.9
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 2.0e-143 513.5 561 50.3
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 2.6e-143 513.1 552 49.8
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 3.3e-143 512.7 532 49.1
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 1.3e-142 510.8 528 51.9
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 2.8e-142 509.6 529 51.4
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 7.0e-141 505.0 555 50.3
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.2e-140 504.2 531 51.0
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 1.0e-139 501.1 527 55.0
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 2.9e-139 499.6 532 51.3
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 6.5e-139 498.4 270 92.6
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.1e-138 497.7 573 48.0
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 1.5e-138 497.3 527 51.0
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 1.9e-138 496.9 527 51.0
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 2.5e-138 496.5 526 53.0
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 5.5e-138 495.4 530 50.6
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 5.5e-138 495.4 538 49.8
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.5e-135 487.3 563 48.3
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.8e-134 483.0 533 49.0
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.4e-133 480.7 478 52.7
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.2e-131 473.4 543 46.8
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 2.2e-131 473.4 480 49.0
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 5.0e-131 472.2 528 50.6
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 2.5e-130 469.9 526 49.4
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 4.2e-130 469.2 531 48.0
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 1.8e-128 463.8 454 54.2
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 4.0e-128 462.6 538 47.8
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 2.0e-127 460.3 480 50.0
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 2.2e-126 456.8 491 50.1
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 1.8e-125 453.8 475 50.3
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 5.5e-122 442.2 346 61.3
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 3.6e-113 412.9 571 45.0
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.7e-110 402.9 533 45.0
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 3.5e-108 396.4 354 56.2
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 2.3e-104 383.6 534 44.0
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 6.8e-104 382.1 369 55.6
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 6.2e-97 359.0 525 44.4
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 4.6e-92 342.8 329 54.7
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 2.5e-90 337.0 495 39.4
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 2.0e-87 327.4 498 37.8
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 8.7e-67 258.8 439 35.8
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 3.2e-61 240.4 571 33.5
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 1.4e-35 155.2 129 56.6
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 8.2e-33 146.0 189 47.6
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.4e-32 144.4 183 46.4
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 9.1e-32 142.5 125 57.6
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 3.2e-29 134.0 170 45.3
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 9.4e-29 132.5 123 56.9
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.8e-24 118.2 165 46.7
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 1.2e-23 115.5 75 58.7
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.5e-21 108.6 165 43.6
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 4.7e-20 103.6 72 69.4
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 7.5e-18 96.3 89 58.4
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 1.9e-13 81.6 136 38.2
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 9.4e-13 79.3 70 55.7
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 8.0e-12 76.3 62 64.5
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.3e-11 74.7 62 62.9
CARHR217940 Cardamine hirsuta HOM05D007034 ORTHO05D008665 1.7e-06 58.5 41 73.2


User provided reference genes

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