Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.3e-122 441.4 238 100.0
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.6e-108 394.8 238 89.9
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.9e-106 389.4 238 88.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.4e-93 346.7 245 77.1
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 7.2e-93 344.4 232 80.6
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.2e-93 344.4 246 77.2
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 8.0e-92 340.9 246 76.8
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 3.0e-91 339.0 246 77.2
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 6.7e-91 337.8 246 76.0
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.3e-89 333.6 206 84.5
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 2.8e-89 332.4 245 75.1
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.3e-86 323.6 232 76.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.3e-86 323.6 232 76.7
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.7e-86 323.2 232 76.7
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.7e-86 323.2 232 76.7
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.2e-84 317.0 233 72.5
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 3.6e-84 315.5 245 70.6
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 4.7e-84 315.1 241 70.5
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 8.0e-84 314.3 238 70.2
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.0e-83 313.9 244 69.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.4e-83 313.5 242 69.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 3.0e-83 312.4 242 69.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 8.8e-83 310.8 241 70.5
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 9.7e-82 307.4 238 68.5
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 9.7e-82 307.4 234 69.7
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.3e-81 307.0 243 68.3
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.8e-81 305.8 210 75.7
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.8e-81 305.8 244 68.0
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.7e-81 305.4 229 69.4
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.7e-81 305.4 243 67.9
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.1e-80 303.9 243 67.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 1.8e-80 303.1 203 78.8
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.1e-80 302.4 245 68.2
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 4.1e-80 302.0 244 67.6
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.3e-80 301.6 230 69.1
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 7.0e-80 301.2 243 68.3
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.1e-80 300.8 207 75.8
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.2e-79 300.4 243 69.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.2e-79 300.4 243 66.3
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.2e-79 300.4 244 67.2
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.6e-79 300.1 230 69.1
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-79 300.1 230 68.7
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.0e-79 299.7 243 67.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-79 299.3 230 68.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-79 299.3 230 69.1
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 3.5e-79 298.9 234 68.8
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 3.5e-79 298.9 244 67.2
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.5e-79 298.5 207 74.9
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 5.9e-79 298.1 232 70.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 7.7e-79 297.7 244 67.2
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 7.7e-79 297.7 234 68.8
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.0e-78 297.4 206 76.7
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.3e-78 297.0 233 69.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.3e-78 297.0 234 70.1
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.7e-78 296.6 247 65.6
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 2.2e-78 296.2 234 70.1
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.8e-78 295.4 246 66.7
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.0e-78 295.0 233 69.1
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 8.5e-78 294.3 243 66.7
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.1e-77 293.9 244 66.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.1e-77 293.9 234 69.7
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.1e-77 293.9 244 66.8
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.9e-77 293.1 232 66.8
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 1.9e-77 293.1 204 75.5
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.5e-77 292.7 234 68.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 2.5e-77 292.7 253 65.2
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.2e-77 292.0 228 70.6
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 4.2e-77 292.0 239 67.8
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 4.2e-77 292.0 207 74.9
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 5.5e-77 291.6 228 69.7
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.5e-77 291.6 234 69.2
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 5.5e-77 291.6 206 75.2
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 9.4e-77 290.8 243 65.4
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 9.4e-77 290.8 206 74.3
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 9.4e-77 290.8 235 69.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.2e-76 290.4 232 69.4
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.6e-76 290.0 241 65.6
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.6e-76 290.0 204 74.0
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.6e-76 290.0 208 73.6
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.7e-76 289.3 243 66.7
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.7e-76 289.3 234 68.8
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 3.6e-76 288.9 241 65.6
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.1e-76 288.1 244 64.8
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.0e-75 287.3 243 65.0
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.0e-75 287.3 243 65.4
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.4e-75 287.0 229 66.8
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 4.0e-75 285.4 241 66.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.0e-75 285.4 245 64.9
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.5e-74 283.5 194 75.3
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.5e-74 283.5 201 75.6
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.5e-74 283.5 195 75.4
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.0e-74 283.1 232 67.2
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.0e-74 283.1 241 64.3
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.0e-74 283.1 243 65.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 4.4e-74 282.0 196 76.0
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.4e-74 282.0 206 71.8
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 5.7e-74 281.6 241 65.1
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 5.7e-74 281.6 241 65.1
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 5.7e-74 281.6 243 64.2
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 7.5e-74 281.2 241 65.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 1.3e-73 280.4 207 71.0
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.7e-73 280.0 243 63.8
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.7e-73 280.0 196 75.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.2e-73 279.6 244 62.7
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.8e-73 279.3 182 80.2
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 4.8e-73 278.5 207 70.0
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 8.3e-73 277.7 190 75.8
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.1e-72 275.8 241 62.7
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.1e-72 275.8 200 73.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 1.2e-71 273.9 243 63.4
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.6e-71 273.5 157 90.4
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.0e-71 273.1 243 62.1
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.7e-71 272.7 227 63.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 3.5e-71 272.3 241 62.2
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.3e-70 270.4 245 62.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.5e-69 266.9 213 68.5
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.5e-69 266.9 245 60.8
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 3.3e-69 265.8 244 59.8
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.2e-66 257.3 227 62.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.5e-66 256.9 205 67.3
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.4e-66 255.4 206 64.6
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 2.8e-65 252.7 212 63.7
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.7e-65 252.3 201 66.2
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.4e-64 250.4 231 58.4
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.8e-64 250.0 225 60.9
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.7e-63 246.1 181 69.1
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.3e-54 216.5 219 58.4
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 7.3e-53 211.5 165 67.3
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.1e-51 207.6 191 59.7
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-51 206.1 239 51.0
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 3.7e-41 172.6 128 71.9
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-37 160.6 238 46.6
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.3e-37 159.5 112 72.3
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.7e-36 155.6 176 48.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 3.8e-33 146.0 173 45.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 1.6e-28 130.6 97 66.0
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.5e-26 124.0 130 52.3
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 8.4e-25 118.2 86 66.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.2e-24 116.3 188 37.8
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 5.3e-19 99.0 84 60.7
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.2e-17 93.6 90 60.0
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.2e-15 87.8 183 31.1
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-12 77.4 52 73.1
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.4e-11 74.3 189 28.0
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.1e-07 60.5 74 47.3
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.1e-07 60.5 57 56.1
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.0e-06 58.2 77 44.2
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 1.3e-06 57.8 50 58.0


User provided reference genes

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