Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 2.1e-122 442.6 260 100.0
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 1.4e-110 403.3 219 91.3
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.4e-110 403.3 219 90.4
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 9.2e-110 400.6 218 89.9
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.6e-109 399.8 219 90.4
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.0e-108 397.1 219 90.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 2.5e-107 392.5 218 87.6
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.2e-106 390.2 260 87.7
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 4.4e-104 381.7 255 87.5
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 9.9e-104 380.6 212 86.8
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 9.9e-104 380.6 212 86.8
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 5.1e-100 368.2 279 79.9
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 8.1e-98 360.9 219 80.4
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 2.2e-95 352.8 198 86.9
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 9.0e-89 330.9 219 74.0
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.0e-84 315.8 217 70.5
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 8.7e-84 314.3 220 71.4
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 9.0e-81 304.3 216 68.5
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.0e-80 303.1 220 66.4
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 4.5e-80 302.0 220 67.3
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.7e-79 300.1 223 67.7
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 1.7e-79 300.1 215 70.2
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 3.8e-79 298.9 215 69.8
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 3.8e-79 298.9 219 68.0
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 4.9e-79 298.5 219 68.0
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 8.4e-79 297.7 219 67.6
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 7.1e-78 294.7 184 77.7
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 9.3e-78 294.3 221 66.5
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 1.2e-77 293.9 224 67.0
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.2e-77 293.9 217 67.7
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.2e-77 293.9 220 65.9
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.6e-77 293.5 227 66.1
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.6e-77 293.5 217 67.7
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.6e-77 293.5 219 65.3
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.6e-77 293.5 219 65.3
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.6e-77 293.5 219 65.3
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 4.6e-77 292.0 221 67.4
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 7.9e-77 291.2 224 66.5
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.0e-76 290.8 217 67.7
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 1.0e-76 290.8 221 65.2
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.0e-76 290.8 219 64.8
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 1.8e-76 290.0 221 65.6
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 8.7e-76 287.7 216 67.1
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.1e-75 287.3 217 66.8
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.5e-75 287.0 216 65.7
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.9e-75 286.6 218 67.4
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 5.7e-75 285.0 225 64.4
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 7.4e-75 284.6 220 64.1
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 1.3e-74 283.9 216 64.8
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 1.3e-74 283.9 213 66.7
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 1.6e-74 283.5 219 63.9
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.6e-74 283.5 220 64.5
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 1.6e-74 283.5 224 63.4
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.7e-74 282.3 221 63.3
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 1.8e-73 280.0 216 63.4
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 2.4e-73 279.6 220 65.5
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 3.1e-73 279.3 213 64.8
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 4.1e-73 278.9 219 63.9
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.3e-73 278.5 213 63.4
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 1.2e-72 277.3 224 62.1
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.5e-72 276.9 217 63.6
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.4e-72 275.8 214 63.6
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 5.9e-72 275.0 212 64.2
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 5.9e-72 275.0 220 63.2
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 1.0e-71 274.2 199 67.8
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 3.8e-71 272.3 208 65.4
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 3.8e-71 272.3 220 63.6
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 5.0e-71 271.9 213 64.8
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 5.0e-71 271.9 211 64.5
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 8.5e-71 271.2 163 78.5
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.1e-70 270.8 221 63.8
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.4e-70 270.4 218 61.0
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.9e-70 270.0 218 62.4
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 3.2e-70 269.2 249 56.6
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 4.2e-70 268.9 220 62.3
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 5.5e-70 268.5 218 62.8
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.2e-69 267.3 217 61.8
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 1.6e-69 266.9 223 62.8
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 2.1e-69 266.5 219 62.1
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 4.6e-69 265.4 212 63.2
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 2.3e-68 263.1 220 60.9
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 3.0e-68 262.7 227 59.9
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 3.0e-68 262.7 219 59.4
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.0e-68 262.7 199 65.3
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 3.9e-68 262.3 218 60.1
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 5.1e-68 261.9 223 57.8
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 1.1e-67 260.8 216 62.0
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 2.5e-67 259.6 219 59.8
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 3.3e-67 259.2 221 60.2
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 5.7e-67 258.5 161 75.8
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.3e-66 257.3 215 60.0
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.3e-66 257.3 164 74.4
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.3e-66 257.3 215 60.5
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.7e-66 256.9 214 59.8
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.2e-66 256.5 214 59.8
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.8e-66 256.1 214 58.4
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.8e-66 255.4 214 59.3
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.8e-65 253.4 214 59.3
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 4.1e-65 252.3 220 59.1
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.2e-64 250.8 214 58.9
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 6.5e-63 245.0 213 59.2
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 8.5e-63 244.6 225 59.6
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.1e-62 244.2 192 63.0
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.9e-62 243.4 214 58.4
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.4e-60 237.3 168 70.2
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 3.3e-59 232.6 221 53.4
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.2e-58 229.9 221 49.8
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 2.2e-58 229.9 239 52.7
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 2.4e-57 226.5 217 54.8
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.3e-57 225.3 178 64.0
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 1.2e-56 224.2 158 65.8
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.5e-56 223.8 198 58.6
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 5.9e-56 221.9 135 83.7
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 1.0e-55 221.1 209 55.0
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 2.9e-55 219.5 226 54.0
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 3.8e-55 219.2 214 52.3
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 4.2e-54 215.7 214 53.3
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 4.7e-53 212.2 184 67.4
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 4.7e-53 212.2 165 64.8
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 3.0e-52 209.5 168 61.9
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.0e-47 194.5 143 66.4
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 1.1e-46 191.0 158 58.9
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 2.4e-41 173.3 122 66.4
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.1e-41 171.4 162 52.5
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.2e-39 166.8 170 52.4
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 4.4e-35 152.5 90 78.9
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.6e-32 144.1 89 71.9
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 2.3e-31 140.2 102 63.7
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.6e-29 134.0 113 61.1
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 4.0e-28 129.4 170 47.1
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 6.8e-28 128.6 193 43.5
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 2.6e-27 126.7 169 46.7
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 5.7e-27 125.6 183 39.3
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 8.9e-20 101.7 137 46.0
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 4.9e-18 95.9 154 42.2
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 5.4e-17 92.4 61 73.8
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 7.0e-17 92.0 49 83.7
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 3.5e-16 89.7 61 72.1
SpUn0056_0040 Schrenkiella parvula HOM05D005088 ORTHO05D017652 1.0e-15 88.2 58 70.7
C06p46790 Brassica napus HOM05D005088 ORTHO05D017652 3.3e-14 83.2 52 75.0
BolC2t09028H Brassica oleracea HOM05D005088 ORTHO05D017652 3.3e-14 83.2 61 68.9
C05p10570 Brassica napus HOM05D005088 ORTHO05D017652 9.5e-14 81.6 61 68.9
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 3.0e-07 60.1 57 52.6
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 8.6e-07 58.5 45 60.0


User provided reference genes

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