Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR153810 Cardamine hirsuta HOM05D002718 ORTHO05D003269 1.1e-107 393.3 198 100.0
Carub.0005s0889 Capsella rubella HOM05D002718 ORTHO05D003269 9.0e-65 250.8 227 63.0
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.5e-64 250.0 225 64.0
Sp6g17930 Schrenkiella parvula HOM05D002718 ORTHO05D003269 3.4e-64 248.8 229 61.6
BcaB08g35974 Brassica carinata HOM05D002718 ORTHO05D003269 4.5e-64 248.4 225 62.7
BcaC04g20159 Brassica carinata HOM05D002718 ORTHO05D003269 4.5e-64 248.4 225 62.2
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.3e-63 246.9 225 61.8
Thhalv10012582m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 1.3e-63 246.9 228 62.3
BraA10t43426Z Brassica rapa HOM05D002718 ORTHO05D003269 8.4e-63 244.2 226 62.8
BolC9t57573H Brassica oleracea HOM05D002718 ORTHO05D003269 1.4e-62 243.4 226 61.9
AT3G42850 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 4.6e-61 238.4 227 61.2
AL5G21150 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 1.0e-60 237.3 227 60.8
THA.LOC104810997 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 2.4e-57 226.1 232 56.0
C01p28220 Brassica napus HOM05D002718 ORTHO05D003269 3.4e-56 222.2 225 59.1
C08p28790 Brassica napus HOM05D002718 ORTHO05D003269 5.5e-54 214.9 129 86.0
Cpa.g.sc115.31 Carica papaya HOM05D002718 ORTHO05D003269 5.5e-54 214.9 232 53.4
Hma1.2p1_0284F.1_g113850 Hydrangea macrophylla HOM05D002718 ORTHO05D003269 1.3e-50 203.8 237 50.2
PSO675G7617 Papaver somniferum HOM05D002718 ORTHO05D003269 2.2e-50 203.0 237 48.9
Potri.018G003100 Populus trichocarpa HOM05D002718 ORTHO05D003269 4.8e-50 201.8 237 48.1
ECA246G1707 Erigeron canadensis HOM05D002718 ORTHO05D003269 6.3e-50 201.4 235 48.9
Aa31LG10G6050 Aethionema arabicum HOM05D002718 ORTHO05D003269 1.1e-49 200.7 235 48.9
PGR142G2777 Punica granatum HOM05D002718 ORTHO05D003269 1.4e-49 200.3 241 48.1
FAN20G1933 Fragaria x ananassa HOM05D002718 ORTHO05D003269 1.8e-49 199.9 235 46.4
MD15G1103100 Malus domestica HOM05D002718 ORTHO05D003269 2.4e-49 199.5 234 46.6
TAR383G0086 Trochodendron aralioides HOM05D002718 ORTHO05D003269 2.4e-49 199.5 242 48.3
GSVIVG01032250001 Vitis vinifera HOM05D002718 ORTHO05D003269 2.4e-49 199.5 217 53.5
Sabra18G0002900 Salix brachista HOM05D002718 ORTHO05D003269 3.1e-49 199.1 237 48.1
Sabra18G0006300 Salix brachista HOM05D002718 ORTHO05D003269 3.1e-49 199.1 237 48.1
CiPaw.08G021400 Carya illinoinensis HOM05D002718 ORTHO05D003269 5.3e-49 198.4 235 48.1
Manes.16G137600 Manihot esculenta HOM05D002718 ORTHO05D003269 5.3e-49 198.4 235 47.2
FvH4_2g36460 Fragaria vesca HOM05D002718 ORTHO05D003269 6.9e-49 198.0 235 46.4
Nitab4.5_0001535g0040 Nicotiana tabacum HOM05D002718 ORTHO05D003269 9.0e-49 197.6 129 72.9
Prupe.1G456000 Prunus persica HOM05D002718 ORTHO05D003269 9.0e-49 197.6 235 47.2
Cpa.g.sc148.1 Carica papaya HOM05D002718 ORTHO05D003269 1.2e-48 197.2 235 47.7
PGR084G0004 Punica granatum HOM05D002718 ORTHO05D003269 1.2e-48 197.2 236 47.0
PGR142G1783 Punica granatum HOM05D002718 ORTHO05D003269 1.2e-48 197.2 236 47.0
RcHm_v2.0_Chr6g0305421 Rosa chinensis HOM05D002718 ORTHO05D003269 1.5e-48 196.8 235 45.5
MSTRG.11818 Avicennia marina HOM05D002718 ORTHO05D003269 2.0e-48 196.4 232 48.3
Potri.018G145700 Populus trichocarpa HOM05D002718 ORTHO05D003269 2.0e-48 196.4 228 49.1
Rhsim04G0184400 Rhododendron simsii HOM05D002718 ORTHO05D003269 2.0e-48 196.4 234 48.3
SGA_v2.0_scaffold27G11655 Striga asiatica HOM05D002718 ORTHO05D003269 2.0e-48 196.4 233 50.2
MELO3C018969.2 Cucumis melo HOM05D002718 ORTHO05D003269 2.6e-48 196.1 235 48.5
MD08G1124400 Malus domestica HOM05D002718 ORTHO05D003269 3.4e-48 195.7 235 46.0
BcaNung00226 Brassica carinata HOM05D002718 ORTHO05D003269 4.5e-48 195.3 235 48.1
CANSAT35G0611 Cannabis sativa HOM05D002718 ORTHO05D003269 4.5e-48 195.3 235 46.4
Duzib168G0110 Durio zibethinus HOM05D002718 ORTHO05D003269 4.5e-48 195.3 235 46.4
Sabra18G0127600 Salix brachista HOM05D002718 ORTHO05D003269 5.9e-48 194.9 228 48.2
ClCG10G008570 Citrullus lanatus HOM05D002718 ORTHO05D003269 7.7e-48 194.5 235 48.1
HanXRQChr17g0539291 Helianthus annuus HOM05D002718 ORTHO05D003269 7.7e-48 194.5 234 48.3
Lsat_1_v5_gn_3_26460 Lactuca sativa HOM05D002718 ORTHO05D003269 7.7e-48 194.5 237 48.1
Nn8g41097 Nelumbo nucifera HOM05D002718 ORTHO05D003269 7.7e-48 194.5 129 71.3
vmacro08496 Vaccinium macrocarpon HOM05D002718 ORTHO05D003269 7.7e-48 194.5 234 47.9
Cc11_g03230 Coffea canephora HOM05D002718 ORTHO05D003269 1.0e-47 194.1 234 47.0
CsaV3_4G009070 Cucumis sativus L. HOM05D002718 ORTHO05D003269 1.3e-47 193.7 235 48.1
PSO675G1851 Papaver somniferum HOM05D002718 ORTHO05D003269 1.3e-47 193.7 227 48.0
BcaC09g50300 Brassica carinata HOM05D002718 ORTHO05D003269 1.7e-47 193.4 235 47.7
C01p26840 Brassica napus HOM05D002718 ORTHO05D003269 1.7e-47 193.4 235 47.7
BolC1t02628H Brassica oleracea HOM05D002718 ORTHO05D003269 1.7e-47 193.4 235 47.7
TWI32G0829 Tripterygium wilfordii HOM05D002718 ORTHO05D003269 1.7e-47 193.4 235 46.8
Aqoxy4G00376 Aquilegia oxysepala HOM05D002718 ORTHO05D003269 2.2e-47 193.0 129 70.5
A01p21500 Brassica napus HOM05D002718 ORTHO05D003269 2.2e-47 193.0 235 47.2
BraA01t02056Z Brassica rapa HOM05D002718 ORTHO05D003269 2.2e-47 193.0 235 47.2
Cc00_g00350 Coffea canephora HOM05D002718 ORTHO05D003269 2.2e-47 193.0 129 71.3
Sed0009215 Sechium edule HOM05D002718 ORTHO05D003269 2.2e-47 193.0 235 48.1
Atru.chr7.2686 Acer truncatum HOM05D002718 ORTHO05D003269 2.9e-47 192.6 233 45.1
CAN.G600.5 Capsicum annuum HOM05D002718 ORTHO05D003269 2.9e-47 192.6 129 71.3
COL.COLO4_18626 Corchorus olitorius HOM05D002718 ORTHO05D003269 2.9e-47 192.6 236 46.2
Sabra18G0120000 Salix brachista HOM05D002718 ORTHO05D003269 2.9e-47 192.6 228 48.2
Cfa013311 Carpinus fangiana HOM05D002718 ORTHO05D003269 3.8e-47 192.2 235 46.0
Thhalv10024313m.g Eutrema salsugineum HOM05D002718 ORTHO05D003269 3.8e-47 192.2 235 48.1
Actinidia25741 Actinidia chinensis HOM05D002718 ORTHO05D003269 5.0e-47 191.8 234 47.0
MSTRG.10465 Avicennia marina HOM05D002718 ORTHO05D003269 5.0e-47 191.8 240 47.1
Ciclev10007339m.g Citrus clementina HOM05D002718 ORTHO05D003269 5.0e-47 191.8 235 46.4
Gohir.A06G107500 Gossypium hirsutum HOM05D002718 ORTHO05D003269 5.0e-47 191.8 235 45.1
Gohir.D06G109800 Gossypium hirsutum HOM05D002718 ORTHO05D003269 5.0e-47 191.8 235 45.1
Gorai.010G124600 Gossypium raimondii HOM05D002718 ORTHO05D003269 5.0e-47 191.8 235 45.1
Lj7C754T6 Lonicera japonica HOM05D002718 ORTHO05D003269 5.0e-47 191.8 232 46.6
Psat6g034400 Pisum sativum HOM05D002718 ORTHO05D003269 6.5e-47 191.4 234 46.2
QL12p025880 Quercus lobata HOM05D002718 ORTHO05D003269 6.5e-47 191.4 129 69.8
PGSC0003DMG400009774 Solanum tuberosum HOM05D002718 ORTHO05D003269 6.5e-47 191.4 129 71.3
Thecc.09G002800 Theobroma cacao HOM05D002718 ORTHO05D003269 6.5e-47 191.4 235 45.5
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 6.5e-47 191.4 234 46.2
CANSAT25G2302 Cannabis sativa HOM05D002718 ORTHO05D003269 8.5e-47 191.0 235 45.5
AUR62038736 Chenopodium quinoa HOM05D002718 ORTHO05D003269 8.5e-47 191.0 234 46.2
Manes.03G001300 Manihot esculenta HOM05D002718 ORTHO05D003269 1.1e-46 190.7 235 46.0
Psat0s2005g0040 Pisum sativum HOM05D002718 ORTHO05D003269 1.1e-46 190.7 234 46.2
THA.LOC104820278 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 1.1e-46 190.7 235 47.2
GSVIVG01035565001 Vitis vinifera HOM05D002718 ORTHO05D003269 1.1e-46 190.7 235 47.7
AUR62020642 Chenopodium quinoa HOM05D002718 ORTHO05D003269 1.4e-46 190.3 234 46.2
Dinv37495 Davidia involucrata HOM05D002718 ORTHO05D003269 1.4e-46 190.3 234 44.9
Migut.A00453 Erythranthe guttata HOM05D002718 ORTHO05D003269 1.4e-46 190.3 129 72.1
Lj3C988G10 Lonicera japonica HOM05D002718 ORTHO05D003269 1.4e-46 190.3 235 46.0
PSO170G4524 Papaver somniferum HOM05D002718 ORTHO05D003269 1.4e-46 190.3 241 46.5
AL7G39040 Arabidopsis lyrata HOM05D002718 ORTHO05D003269 1.9e-46 189.9 235 47.7
FAN27G0986 Fragaria x ananassa HOM05D002718 ORTHO05D003269 1.9e-46 189.9 239 45.2
MBI16_g37213_MAGBIO Magnolia biondii HOM05D002718 ORTHO05D003269 1.9e-46 189.9 240 45.0
Sp7g14590 Schrenkiella parvula HOM05D002718 ORTHO05D003269 1.9e-46 189.9 235 47.7
EL10Ac2g03697 Beta vulgaris HOM05D002718 ORTHO05D003269 2.5e-46 189.5 235 46.0
DCAR_000671 Daucus carota HOM05D002718 ORTHO05D003269 2.5e-46 189.5 235 45.5
Eucgr.C02132 Eucalyptus grandis HOM05D002718 ORTHO05D003269 2.5e-46 189.5 240 46.7
Peaxi162Scf00320g00216 Petunia axillaris HOM05D002718 ORTHO05D003269 2.5e-46 189.5 129 69.8
CARHR222420 Cardamine hirsuta HOM05D002718 ORTHO05D003269 3.2e-46 189.1 236 46.6
Oeu028830.2 Olea europaea HOM05D002718 ORTHO05D003269 3.2e-46 189.1 254 46.5
Oeu059291.2 Olea europaea HOM05D002718 ORTHO05D003269 3.2e-46 189.1 235 46.8
Sopen00g003670 Solanum pennellii HOM05D002718 ORTHO05D003269 3.2e-46 189.1 129 70.5
Sopen07g005900 Solanum pennellii HOM05D002718 ORTHO05D003269 3.2e-46 189.1 129 70.5
AT4G16130 Arabidopsis thaliana HOM05D002718 ORTHO05D003269 4.2e-46 188.7 235 46.8
Lj5g0024079 Lotus japonicus HOM05D002718 ORTHO05D003269 4.2e-46 188.7 234 45.7
SalBow4G0158 Salvia bowleyana HOM05D002718 ORTHO05D003269 5.5e-46 188.3 233 46.4
Solyc07g016170.4 Solanum lycopersicum HOM05D002718 ORTHO05D003269 5.5e-46 188.3 129 70.5
CiPaw.07G209700 Carya illinoinensis HOM05D002718 ORTHO05D003269 7.2e-46 188.0 235 46.4
Carub.0007s2548 Capsella rubella HOM05D002718 ORTHO05D003269 9.4e-46 187.6 132 69.7
CAN.G480.17 Capsicum annuum HOM05D002718 ORTHO05D003269 9.4e-46 187.6 234 46.2
CSS0012006 Camellia sinensis var. sinensis HOM05D002718 ORTHO05D003269 1.2e-45 187.2 234 46.2
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 1.2e-45 187.2 233 47.6
Dinv38809 Davidia involucrata HOM05D002718 ORTHO05D003269 1.6e-45 186.8 235 46.4
Medtr1g009190 Medicago truncatula HOM05D002718 ORTHO05D003269 1.6e-45 186.8 234 47.0
SHI02366 Sapria himalayana HOM05D002718 ORTHO05D003269 1.6e-45 186.8 237 46.8
Nitab4.5_0000970g0160 Nicotiana tabacum HOM05D002718 ORTHO05D003269 2.1e-45 186.4 234 45.7
Solyc08g069231.1 Solanum lycopersicum HOM05D002718 ORTHO05D003269 2.1e-45 186.4 237 45.6
Ca_12844_v3 Cicer arietinum L. HOM05D002718 ORTHO05D003269 2.7e-45 186.0 234 45.3
Hund03264 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.7e-45 186.0 235 45.5
Sopen08g022860 Solanum pennellii HOM05D002718 ORTHO05D003269 2.7e-45 186.0 237 45.1
VMungo0647G1266 Vigna mungo HOM05D002718 ORTHO05D003269 2.7e-45 186.0 234 45.3
Peaxi162Scf00213g00943 Petunia axillaris HOM05D002718 ORTHO05D003269 3.6e-45 185.7 234 44.9
Nitab4.5_0001942g0140 Nicotiana tabacum HOM05D002718 ORTHO05D003269 4.6e-45 185.3 234 45.7
Phvul.001G077700 Phaseolus vulgaris HOM05D002718 ORTHO05D003269 6.1e-45 184.9 234 44.4
THA.LOC104802597 Tarenaya hassleriana HOM05D002718 ORTHO05D003269 7.9e-45 184.5 235 46.4
HPP92_017382 Vanilla planifolia HOM05D002718 ORTHO05D003269 1.0e-44 184.1 132 65.2
CsaV3_3G047280 Cucumis sativus L. HOM05D002718 ORTHO05D003269 1.4e-44 183.7 239 42.7
ATR0626G149 Amborella trichopoda HOM05D002718 ORTHO05D003269 1.8e-44 183.3 129 66.7
MELO3C003601.2 Cucumis melo HOM05D002718 ORTHO05D003269 1.8e-44 183.3 235 43.4
Lalb_Chr08g0243461 Lupinus albus HOM05D002718 ORTHO05D003269 1.8e-44 183.3 233 44.2
Sc06g0001240 Simmondsia chinensis HOM05D002718 ORTHO05D003269 1.8e-44 183.3 237 44.7
Nitab4.5_0000899g0120 Nicotiana tabacum HOM05D002718 ORTHO05D003269 2.3e-44 183.0 129 69.0
Sabra18G0006600 Salix brachista HOM05D002718 ORTHO05D003269 3.0e-44 182.6 269 42.4
MSTRG.25768 Avicennia marina HOM05D002718 ORTHO05D003269 5.1e-44 181.8 235 46.8
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 2.0e-43 179.9 129 68.2
Glyma.14G138300 Glycine max HOM05D002718 ORTHO05D003269 2.0e-43 179.9 234 43.6
Glyma.17G194400 Glycine max HOM05D002718 ORTHO05D003269 2.5e-43 179.5 236 44.1
Nn5g27632 Nelumbo nucifera HOM05D002718 ORTHO05D003269 3.3e-43 179.1 129 65.9
Lalb_Chr22g0361171 Lupinus albus HOM05D002718 ORTHO05D003269 5.7e-43 178.3 233 43.3
Os02g0141300 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 9.7e-43 177.6 129 65.1
SalBow5G2825 Salvia bowleyana HOM05D002718 ORTHO05D003269 1.3e-42 177.2 135 64.4
SalBow5G3535 Salvia bowleyana HOM05D002718 ORTHO05D003269 1.3e-42 177.2 135 64.4
Sabra18G0009800 Salix brachista HOM05D002718 ORTHO05D003269 2.8e-42 176.0 285 39.6
Os06g0702500 Oryza sativa ssp. japonica HOM05D002718 ORTHO05D003269 3.7e-42 175.6 132 62.1
Zm00001eb227090 Zea mays HOM05D002718 ORTHO05D003269 3.7e-42 175.6 132 61.4
DCAR_004565 Daucus carota HOM05D002718 ORTHO05D003269 1.4e-41 173.7 251 43.0
Lsat_1_v5_gn_5_56521 Lactuca sativa HOM05D002718 ORTHO05D003269 2.0e-40 169.9 238 42.0
SEGI_37495 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 7.7e-40 167.9 242 40.9
SEGI_21242 Sequoiadendron giganteum HOM05D002718 ORTHO05D003269 3.8e-39 165.6 131 61.8
Haze_21795 Corylus avellana HOM05D002718 ORTHO05D003269 8.5e-39 164.5 117 67.5
AagrBONN_evm.TU.Sc2ySwM_117.407 Anthoceros agrestis HOM05D002718 ORTHO05D003269 5.5e-38 161.8 233 43.3
QL12p025856 Quercus lobata HOM05D002718 ORTHO05D003269 4.7e-37 158.7 115 65.2
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 2.6e-35 152.9 214 43.5
Pp3c6_8620 Physcomitrium patens HOM05D002718 ORTHO05D003269 2.6e-35 152.9 232 39.2
Pp3c16_4920 Physcomitrium patens HOM05D002718 ORTHO05D003269 1.3e-34 150.6 231 40.7
SMO146G0086 Selaginella moellendorffii HOM05D002718 ORTHO05D003269 2.2e-34 149.8 234 39.3
CBR_g29486 Chara braunii HOM05D002718 ORTHO05D003269 2.8e-34 149.4 130 54.6
PRCOL_00002758 Prasinoderma coloniale HOM05D002718 ORTHO05D003269 4.8e-34 148.7 227 39.2
Mapoly0043s0024 Marchantia polymorpha HOM05D002718 ORTHO05D003269 3.1e-33 146.0 132 56.1
arahy.Tifrunner.gnm1.ann1.NA6C8E Arachis hypogaea HOM05D002718 ORTHO05D003269 2.0e-32 143.3 235 38.3
arahy.Tifrunner.gnm1.ann1.YWBJ1A Arachis hypogaea HOM05D002718 ORTHO05D003269 2.0e-32 143.3 235 38.3
Potri.018G138202 Populus trichocarpa HOM05D002718 ORTHO05D003269 7.2e-30 134.8 123 58.5
unitig_32.g11648 Utricularia gibba HOM05D002718 ORTHO05D003269 4.7e-29 132.1 235 38.3
A08p12450 Brassica napus HOM05D002718 ORTHO05D021965 2.9e-23 112.8 89 64.0
BraA08t33211Z Brassica rapa HOM05D002718 ORTHO05D021965 2.9e-23 112.8 89 64.0
Cre03.g185300 Chlamydomonas reinhardtii HOM05D002718 ORTHO05D003269 3.8e-23 112.5 222 35.1
ClCG05G026320 Citrullus lanatus HOM05D002718 ORTHO05D003269 3.2e-22 109.4 193 34.7
PGSC0003DMG401029558 Solanum tuberosum HOM05D002718 ORTHO05D003269 8.8e-20 101.3 65 73.8
BcaB04g18359 Brassica carinata HOM05D002718 ORTHO05D003269 2.0e-16 90.1 59 72.9
MCO10G390 Micromonas commoda HOM05D002718 ORTHO05D003269 5.5e-14 82.0 128 36.7
PSO675G2070 Papaver somniferum HOM05D002718 ORTHO05D021965 3.0e-12 76.3 51 68.6
BolC8t48332H Brassica oleracea HOM05D002718 ORTHO05D021965 2.4e-09 66.6 45 73.3
BcaB04g18358 Brassica carinata HOM05D002718 ORTHO05D003269 1.2e-08 64.3 148 31.1
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 2.0e-08 63.5 46 65.2
BcaC07g37950 Brassica carinata HOM05D049696 ORTHO05D021965 2.0e-08 63.5 44 70.5
arahy.Tifrunner.gnm1.ann1.JKU0Z0 Arachis hypogaea HOM05D000572 ORTHO05D083655 1.3e-07 60.8 54 61.1
Zm00001eb208110 Zea mays HOM05D002718 ORTHO05D003269 2.9e-07 59.7 40 67.5
BraA07t28757Z Brassica rapa HOM05D002718 ORTHO05D003269 1.5e-06 57.4 34 82.4


User provided reference genes

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