Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 2.3e-51 205.3 104 100.0
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.0e-35 153.3 106 73.6
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.3e-35 152.1 99 76.8
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.3e-34 148.3 106 72.6
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 4.3e-34 147.9 106 70.8
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.8e-33 145.2 99 72.7
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 4.8e-33 144.4 99 73.7
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.4e-32 142.9 99 71.7
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.1e-32 141.7 99 71.7
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.5e-31 139.4 99 69.7
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 7.6e-31 137.1 99 69.7
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.3e-30 136.3 99 70.7
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.3e-30 136.3 99 67.7
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.7e-30 136.0 99 66.7
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 3.8e-30 134.8 99 67.7
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 3.8e-30 134.8 99 67.7
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 3.8e-30 134.8 99 67.7
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.4e-29 132.9 103 67.0
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.9e-29 132.5 99 68.7
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 3.2e-29 131.7 99 63.6
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 5.5e-29 131.0 99 67.7
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 9.3e-29 130.2 99 64.6
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 9.3e-29 130.2 99 64.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.2e-28 129.8 99 66.7
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-28 129.8 99 66.7
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-28 129.8 99 66.7
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.2e-28 129.8 99 64.6
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.1e-28 129.0 99 65.7
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.7e-28 128.6 99 63.6
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 3.5e-28 128.3 99 63.6
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 3.5e-28 128.3 99 63.6
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.5e-28 128.3 99 65.7
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 3.5e-28 128.3 99 64.6
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 4.6e-28 127.9 99 64.6
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 6.0e-28 127.5 99 61.6
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 7.9e-28 127.1 99 62.6
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 7.9e-28 127.1 99 62.6
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.8e-27 125.9 99 61.6
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.8e-27 125.9 97 67.0
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.8e-27 125.9 99 62.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 1.8e-27 125.9 99 63.6
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-27 125.6 99 61.6
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.3e-27 125.6 99 63.6
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 3.0e-27 125.2 99 63.6
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 3.0e-27 125.2 99 61.6
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.0e-27 125.2 99 64.6
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 3.9e-27 124.8 99 62.6
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 3.9e-27 124.8 99 61.6
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.9e-27 124.8 99 60.6
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 3.9e-27 124.8 99 65.7
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 61.6
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 6.7e-27 124.0 99 60.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 8.7e-27 123.6 99 62.6
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 8.7e-27 123.6 99 61.6
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 8.7e-27 123.6 99 63.6
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.1e-26 123.2 99 64.6
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.1e-26 123.2 99 65.7
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.5e-26 122.9 99 59.6
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.9e-26 122.5 99 61.6
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.9e-26 122.5 99 65.7
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.5e-26 122.1 106 59.4
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 2.5e-26 122.1 106 59.4
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 3.3e-26 121.7 99 60.6
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 3.3e-26 121.7 99 60.6
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.3e-26 121.7 99 58.6
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.3e-26 121.3 99 61.6
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 4.3e-26 121.3 99 59.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.7e-26 120.9 99 60.6
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 5.7e-26 120.9 99 58.6
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.4e-26 120.6 99 60.6
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.4e-26 120.6 99 60.6
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 7.4e-26 120.6 99 60.6
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 9.6e-26 120.2 99 59.6
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 9.6e-26 120.2 99 60.6
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.3e-25 119.8 100 61.0
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.3e-25 119.8 99 57.6
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.6e-25 119.4 99 62.6
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 1.6e-25 119.4 99 60.6
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.6e-25 119.4 99 60.6
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.6e-25 119.4 99 60.6
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 2.1e-25 119.0 99 60.6
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.1e-25 119.0 99 59.6
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 4.8e-25 117.9 100 58.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 6.2e-25 117.5 99 58.6
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 8.2e-25 117.1 100 57.0
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.1e-24 116.7 99 57.6
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 1.4e-24 116.3 99 57.6
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.4e-24 116.3 99 57.6
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.4e-24 116.3 99 54.5
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.4e-24 116.3 99 62.6
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.4e-24 116.3 99 57.6
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.8e-24 115.9 99 58.6
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.4e-24 115.5 100 57.0
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 3.1e-24 115.2 99 60.6
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 3.1e-24 115.2 97 57.7
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 4.1e-24 114.8 97 57.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 5.3e-24 114.4 99 56.6
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 6.9e-24 114.0 99 57.6
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.9e-24 114.0 99 55.6
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 9.0e-24 113.6 99 54.5
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.5e-23 112.8 99 58.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.5e-23 112.8 100 56.0
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.5e-23 112.8 100 56.0
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.5e-23 112.8 99 58.6
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.5e-23 112.8 99 58.6
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.5e-23 112.8 99 58.6
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.0e-23 112.5 99 57.6
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.4e-23 111.7 99 54.5
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.8e-23 110.9 99 57.6
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.8e-23 110.9 99 57.6
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.3e-22 109.8 99 54.5
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.3e-22 109.8 99 56.6
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.7e-22 109.4 99 54.5
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.2e-22 109.0 99 54.5
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.2e-22 109.0 98 55.1
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.2e-22 109.0 99 56.6
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 3.8e-22 108.2 97 49.5
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 3.8e-22 108.2 99 55.6
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 6.5e-22 107.5 99 56.6
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.4e-22 107.1 99 52.5
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.2e-21 105.1 99 57.6
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 5.5e-21 104.4 100 54.0
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.2e-20 103.2 99 53.5
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 2.1e-20 102.4 88 58.0
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 7.9e-20 100.5 99 53.5
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.3e-19 99.8 100 51.0
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.3e-19 99.0 99 47.5
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.5e-18 95.5 118 48.3
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.8e-16 89.4 105 52.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.1e-13 80.1 106 45.3
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 4.2e-13 78.2 102 43.1
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 3.6e-12 75.1 99 45.5
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.3e-11 72.4 96 34.4
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.1e-11 71.2 59 55.9
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 5.9e-07 57.8 47 57.4
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 1.0e-06 57.0 43 60.5
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.7e-06 56.2 81 43.2


User provided reference genes

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