Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR142180 Cardamine hirsuta HOM05D001251 ORTHO05D004135 2.7e-270 934.9 519 100.0
Carub.0004s2954 Capsella rubella HOM05D001251 ORTHO05D004135 1.6e-190 669.8 557 71.1
AL4G46300 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 2.3e-184 649.4 556 72.3
AT2G46830 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 6.6e-176 621.3 551 71.7
Sp4g28860 Schrenkiella parvula HOM05D001251 ORTHO05D004135 7.1e-170 601.3 560 64.8
A05p00970 Brassica napus HOM05D001071 ORTHO05D004135 3.0e-152 542.7 536 66.6
BraA05t19097Z Brassica rapa HOM05D001071 ORTHO05D004135 9.7e-151 537.7 533 66.0
C04p01110 Brassica napus HOM05D001071 ORTHO05D004135 3.1e-133 479.6 530 60.6
BolC4t21764H Brassica oleracea HOM05D001071 ORTHO05D004135 3.5e-132 476.1 536 60.3
Aa31LG1G28200 Aethionema arabicum HOM05D001251 ORTHO05D004135 3.1e-117 426.4 565 52.9
THA.LOC104803067 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.2e-84 318.2 658 42.1
BcaC02g12626 Brassica carinata HOM05D001251 ORTHO05D004135 2.3e-83 313.9 399 56.6
THA.LOC104827645 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 5.1e-75 286.2 645 40.0
Gohir.A12G117400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 5.8e-63 246.1 646 37.2
Gohir.D12G121000 Gossypium hirsutum HOM05D001251 ORTHO05D004135 7.6e-63 245.7 646 37.2
Gohir.D12G121100 Gossypium hirsutum HOM05D001251 ORTHO05D004135 7.6e-63 245.7 683 35.9
Gorai.008G132000 Gossypium raimondii HOM05D001251 ORTHO05D004135 9.9e-63 245.4 683 35.9
Gorai.008G131800 Gossypium raimondii HOM05D001251 ORTHO05D004135 2.9e-62 243.8 682 36.1
Thecc.01G332000 Theobroma cacao HOM05D001251 ORTHO05D004135 4.9e-62 243.0 650 36.5
Gohir.A12G117500 Gossypium hirsutum HOM05D001251 ORTHO05D004135 7.1e-61 239.2 683 35.6
COL.COLO4_23060 Corchorus olitorius HOM05D001251 ORTHO05D004135 1.2e-60 238.4 645 35.0
Duzib138G1188 Durio zibethinus HOM05D001251 ORTHO05D004135 3.9e-59 233.4 708 34.7
Duzib133G0065 Durio zibethinus HOM05D001251 ORTHO05D004135 3.3e-58 230.3 653 35.4
QL08p047700 Quercus lobata HOM05D001251 ORTHO05D004135 4.3e-58 229.9 701 34.1
Haze_15754 Corylus avellana HOM05D001251 ORTHO05D004135 5.6e-58 229.6 703 35.3
VMungo1309G2431 Vigna mungo HOM05D001251 ORTHO05D004135 5.6e-58 229.6 629 35.1
Potri.002G180800 Populus trichocarpa HOM05D001251 ORTHO05D004135 9.6e-58 228.8 706 34.4
Cfa003724 Carpinus fangiana HOM05D001251 ORTHO05D004135 2.8e-57 227.3 694 34.6
Eucgr.D02651 Eucalyptus grandis HOM05D001251 ORTHO05D004135 2.8e-57 227.3 673 37.4
Potri.014G106800 Populus trichocarpa HOM05D001251 ORTHO05D004135 3.7e-57 226.9 702 35.0
Gohir.D11G106400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 6.2e-57 226.1 671 34.7
arahy.Tifrunner.gnm1.ann1.0U0SSW Arachis hypogaea HOM05D001251 ORTHO05D004135 6.9e-56 222.6 703 34.9
Gohir.A11G101800 Gossypium hirsutum HOM05D001251 ORTHO05D004135 2.0e-55 221.1 675 34.7
Gorai.007G113900 Gossypium raimondii HOM05D001251 ORTHO05D004135 2.0e-55 221.1 671 34.4
Prupe.2G200400 Prunus persica HOM05D001251 ORTHO05D004135 3.4e-55 220.3 709 33.7
Sabra14G0079000 Salix brachista HOM05D001251 ORTHO05D004135 5.8e-55 219.5 700 33.1
Phvul.009G259650 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.7e-54 218.0 671 33.4
Manes.01G239000 Manihot esculenta HOM05D001251 ORTHO05D004135 2.9e-54 217.2 676 35.5
VMungo0331G1277 Vigna mungo HOM05D001251 ORTHO05D004135 8.4e-54 215.7 691 34.3
Sabra02G0133600 Salix brachista HOM05D001251 ORTHO05D004135 1.9e-53 214.5 709 33.7
PGR031G0915 Punica granatum HOM05D001251 ORTHO05D004135 2.4e-53 214.2 668 35.0
arahy.Tifrunner.gnm1.ann1.J7VJ5I Arachis hypogaea HOM05D001251 ORTHO05D004135 7.1e-53 212.6 689 34.7
CSS0039199 Camellia sinensis var. sinensis HOM05D001251 ORTHO05D004135 2.1e-52 211.1 671 34.9
Ciclev10018964m.g Citrus clementina HOM05D001251 ORTHO05D004135 3.5e-52 210.3 700 33.6
Glyma.19G260900 Glycine max HOM05D001251 ORTHO05D004135 3.5e-52 210.3 690 34.2
Glyma.03G261800 Glycine max HOM05D001251 ORTHO05D004135 4.6e-52 209.9 689 33.8
Sp1g01250 Schrenkiella parvula HOM05D001251 ORTHO05D004135 4.6e-52 209.9 589 38.9
Phvul.010G120401 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.3e-51 208.4 667 34.5
AUR62004570 Chenopodium quinoa HOM05D001251 ORTHO05D004135 1.5e-50 204.9 677 33.2
Glyma.07G048500 Glycine max HOM05D001251 ORTHO05D004135 7.4e-50 202.6 694 34.1
Glyma.16G017400 Glycine max HOM05D001251 ORTHO05D004135 9.6e-50 202.2 689 34.0
MELO3C022302.2 Cucumis melo HOM05D001251 ORTHO05D004135 1.6e-49 201.4 680 32.4
Lalb_Chr10g0100921 Lupinus albus HOM05D001251 ORTHO05D004135 1.6e-49 201.4 691 32.9
MD01G1090900 Malus domestica HOM05D001251 ORTHO05D004135 1.6e-49 201.4 722 33.8
CiPaw.02G045300 Carya illinoinensis HOM05D001251 ORTHO05D004135 3.7e-49 200.3 723 32.1
Manes.05G015600 Manihot esculenta HOM05D001251 ORTHO05D004135 6.2e-49 199.5 677 33.8
AUR62022683 Chenopodium quinoa HOM05D001251 ORTHO05D004135 1.4e-48 198.4 673 32.8
FAN03G0514 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.4e-48 198.4 719 31.7
RcHm_v2.0_Chr1g0361301 Rosa chinensis HOM05D001251 ORTHO05D004135 3.1e-48 197.2 716 32.5
Sc26g0000440 Simmondsia chinensis HOM05D001251 ORTHO05D004135 3.1e-48 197.2 664 33.7
arahy.Tifrunner.gnm1.ann1.P5534Y Arachis hypogaea HOM05D001251 ORTHO05D004135 1.2e-47 195.3 682 33.1
arahy.Tifrunner.gnm1.ann1.GF54Z4 Arachis hypogaea HOM05D001251 ORTHO05D004135 1.5e-47 194.9 685 32.8
Phvul.009G259400 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.5e-47 194.9 696 30.9
Nn1g00457 Nelumbo nucifera HOM05D001251 ORTHO05D004135 2.0e-47 194.5 710 32.0
ClCG06G002330 Citrullus lanatus HOM05D001251 ORTHO05D004135 2.6e-47 194.1 679 32.1
AT1G01060 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 3.4e-47 193.7 596 35.1
Carub.0001s0116 Capsella rubella HOM05D001251 ORTHO05D004135 3.4e-47 193.7 597 35.7
FvH4_7g17850 Fragaria vesca HOM05D001251 ORTHO05D004135 3.4e-47 193.7 715 31.5
CiPaw.01G085700 Carya illinoinensis HOM05D001251 ORTHO05D004135 5.8e-47 193.0 687 32.8
vmacro12634 Vaccinium macrocarpon HOM05D001251 ORTHO05D004135 7.6e-47 192.6 697 32.7
CsaV3_6G008360 Cucumis sativus L. HOM05D001251 ORTHO05D004135 1.0e-46 192.2 677 32.9
Aa31LG1G10420 Aethionema arabicum HOM05D001251 ORTHO05D004135 1.7e-46 191.4 644 32.0
FAN06G1969 Fragaria x ananassa HOM05D001251 ORTHO05D004135 2.9e-46 190.7 712 31.3
Medtr7g118330 Medicago truncatula HOM05D001251 ORTHO05D004135 2.9e-46 190.7 684 32.3
AL1G11460 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 6.5e-46 189.5 601 36.4
Ca_09556_v3 Cicer arietinum L. HOM05D001251 ORTHO05D004135 6.5e-46 189.5 692 33.4
FAN10G0258 Fragaria x ananassa HOM05D001251 ORTHO05D004135 6.5e-46 189.5 708 32.1
TPR.G4678 Trifolium pratense HOM05D001251 ORTHO05D004135 6.5e-46 189.5 692 31.4
FAN06G3608 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.4e-45 188.3 722 31.0
MBI12_g27877_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 1.4e-45 188.3 678 31.6
Lalb_Chr15g0076591 Lupinus albus HOM05D001251 ORTHO05D004135 3.2e-45 187.2 693 33.2
Sed0026128 Sechium edule HOM05D001251 ORTHO05D004135 4.2e-45 186.8 676 31.8
Psat3g000720 Pisum sativum HOM05D001251 ORTHO05D004135 7.1e-45 186.0 689 33.4
FAN10G4260 Fragaria x ananassa HOM05D001251 ORTHO05D004135 9.3e-45 185.7 717 32.1
TWI23G1207 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 9.3e-45 185.7 712 30.9
Thhalv10007028m.g Eutrema salsugineum HOM05D001251 ORTHO05D004135 1.6e-44 184.9 598 35.5
DCAR_006991 Daucus carota HOM05D001251 ORTHO05D004135 2.1e-44 184.5 690 30.3
A10p00850 Brassica napus HOM05D001251 ORTHO05D004135 2.7e-44 184.1 584 38.4
Lalb_Chr18g0044761 Lupinus albus HOM05D001251 ORTHO05D004135 3.5e-44 183.7 681 31.4
Lj3g0020484 Lotus japonicus HOM05D001251 ORTHO05D004135 4.6e-44 183.3 695 31.1
FAN01G0834 Fragaria x ananassa HOM05D001251 ORTHO05D004135 7.9e-44 182.6 712 30.9
THA.LOC104825910 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.3e-43 181.8 673 30.9
EL10Ac1g00171 Beta vulgaris HOM05D001251 ORTHO05D004135 3.9e-43 180.3 675 32.0
ECA240G1436 Erigeron canadensis HOM05D001251 ORTHO05D004135 3.9e-43 180.3 653 31.1
BcaB01g06139 Brassica carinata HOM05D001251 ORTHO05D004135 1.9e-42 177.9 535 37.6
BolC3t12576H Brassica oleracea HOM05D001251 ORTHO05D004135 1.9e-42 177.9 535 37.6
C03p00110 Brassica napus HOM05D001251 ORTHO05D004135 2.5e-42 177.6 542 38.2
TWI14G1269 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 3.3e-42 177.2 709 30.6
Oeu064410.3 Olea europaea HOM05D001251 ORTHO05D004135 4.3e-42 176.8 684 30.8
CARHR001420 Cardamine hirsuta HOM05D001251 ORTHO05D004135 5.7e-42 176.4 556 33.3
BcaB03g13553 Brassica carinata HOM05D001071 ORTHO05D004135 9.6e-42 175.6 578 33.6
C05p00880 Brassica napus HOM05D001251 ORTHO05D004135 9.6e-42 175.6 594 36.9
BolC5t28872H Brassica oleracea HOM05D001251 ORTHO05D004135 9.6e-42 175.6 583 36.7
BraA10t42363Z Brassica rapa HOM05D001251 ORTHO05D004135 9.6e-42 175.6 595 36.5
Cc02_g39990 Coffea canephora HOM05D001251 ORTHO05D004135 9.6e-42 175.6 701 30.2
TAR374G0209 Trochodendron aralioides HOM05D001251 ORTHO05D004135 9.6e-42 175.6 716 31.4
Hma1.2p1_0074F.1_g038840 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 1.3e-41 175.3 688 31.4
BraA08t35670Z Brassica rapa HOM05D001251 ORTHO05D004135 2.1e-41 174.5 547 36.6
PSO782G0772 Papaver somniferum HOM05D001251 ORTHO05D004135 3.7e-41 173.7 754 29.4
Sed0027265 Sechium edule HOM05D001251 ORTHO05D004135 4.8e-41 173.3 681 32.2
MSTRG.4794 Avicennia marina HOM05D001251 ORTHO05D004135 6.3e-41 172.9 719 29.6
Peaxi162Scf00092g01519 Petunia axillaris HOM05D001251 ORTHO05D004135 6.3e-41 172.9 732 30.5
Hma1.2p1_2492F.1_g323260 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 1.4e-40 171.8 703 29.4
Hund16759 Selenicereus undatus HOM05D001251 ORTHO05D004135 1.4e-40 171.8 644 31.4
Sopen10g001100 Solanum pennellii HOM05D001251 ORTHO05D004135 1.8e-40 171.4 709 31.2
HanXRQChr09g0264411 Helianthus annuus HOM05D001251 ORTHO05D004135 3.1e-40 170.6 587 33.4
SalBow5G5002 Salvia bowleyana HOM05D001251 ORTHO05D004135 3.1e-40 170.6 711 29.4
Migut.N01518 Erythranthe guttata HOM05D001251 ORTHO05D004135 4.1e-40 170.2 701 31.2
Solyc10g005080.3 Solanum lycopersicum HOM05D001251 ORTHO05D004135 5.3e-40 169.9 704 31.4
Atru.chr5.788 Acer truncatum HOM05D001251 ORTHO05D004135 9.0e-40 169.1 392 39.5
unitig_45.g31541 Utricularia gibba HOM05D001251 ORTHO05D004135 9.0e-40 169.1 696 31.0
HanXRQChr09g0264401 Helianthus annuus HOM05D001251 ORTHO05D004135 1.5e-39 168.3 617 35.3
Cpa.g.sc57.78 Carica papaya HOM05D001251 ORTHO05D004135 2.6e-39 167.5 459 38.1
Lj9C609G5 Lonicera japonica HOM05D001251 ORTHO05D004135 2.6e-39 167.5 638 32.9
Actinidia01529 Actinidia chinensis HOM05D001251 ORTHO05D004135 4.5e-39 166.8 661 32.2
PSO063G2933 Papaver somniferum HOM05D001251 ORTHO05D004135 7.6e-39 166.0 756 30.3
Ah.05g178860 Amaranthus hybridus HOM05D001251 ORTHO05D004135 2.2e-38 164.5 679 29.9
Nitab4.5_0005359g0030 Nicotiana tabacum HOM05D001251 ORTHO05D004135 6.5e-38 162.9 703 28.9
CAN.G1150.2 Capsicum annuum HOM05D001251 ORTHO05D004135 2.5e-37 161.0 711 30.1
A08p37730 Brassica napus HOM05D001251 ORTHO05D004135 7.2e-37 159.5 517 36.0
THA.LOC104815900 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 7.2e-37 159.5 663 33.8
MBI04_g18999_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 7.9e-36 156.0 723 31.1
Os08g0157600 Oryza sativa ssp. japonica HOM05D001251 ORTHO05D004135 1.3e-35 155.2 668 30.4
Aqoxy7G00001_Aqoxy7G00002 Aquilegia oxysepala HOM05D001251 ORTHO05D004135 1.1e-34 152.1 641 30.4
HanXRQChr15g0489581 Helianthus annuus HOM05D001251 ORTHO05D004135 1.5e-34 151.8 606 32.0
unitig_8.g3406 Utricularia gibba HOM05D001251 ORTHO05D004135 9.7e-34 149.1 661 30.4
Dinv34262 Davidia involucrata HOM05D001251 ORTHO05D004135 6.3e-33 146.4 539 31.5
FAN01G1785 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.1e-32 145.6 692 28.6
TAR629G3201 Trochodendron aralioides HOM05D001251 ORTHO05D004135 2.4e-32 144.4 704 29.3
ATR0661G164 Amborella trichopoda HOM05D001251 ORTHO05D004135 6.9e-32 142.9 736 27.3
CDE04G0747 Ceratophyllum demersum HOM05D001251 ORTHO05D004135 6.9e-32 142.9 565 31.2
unitig_578.g16510 Utricularia gibba HOM05D001251 ORTHO05D004135 1.2e-31 142.1 542 32.7
BcaC02g12627 Brassica carinata HOM05D001071 ORTHO05D000932 2.6e-31 141.0 109 72.5
BolC7t40758H Brassica oleracea HOM05D001251 ORTHO05D004135 1.7e-30 138.3 562 34.5
unitig_22.g6823 Utricularia gibba HOM05D001251 ORTHO05D004135 6.5e-30 136.3 658 29.3
Dinv32652 Davidia involucrata HOM05D001251 ORTHO05D004135 1.1e-29 135.6 384 37.8
SGA_v2.0_scaffold232G43523 Striga asiatica HOM05D001251 ORTHO05D004135 1.6e-28 131.7 673 31.8
Zm00001eb172450 Zea mays HOM05D001251 ORTHO05D004135 7.9e-28 129.4 637 28.6
unitig_8.g4997 Utricularia gibba HOM05D001251 ORTHO05D004135 8.8e-27 125.9 671 29.4
Nitab4.5_0007792g0010 Nicotiana tabacum HOM05D001251 ORTHO05D004135 1.5e-26 125.2 672 26.6
Oeu034954.1 Olea europaea HOM05D001251 ORTHO05D004135 2.4e-24 117.9 402 31.1
HPP92_002735 Vanilla planifolia HOM05D001251 ORTHO05D004135 4.1e-24 117.1 603 31.0
Zm00001eb415760 Zea mays HOM05D001251 ORTHO05D004135 3.4e-23 114.0 196 44.4
BcaC06g36494 Brassica carinata HOM05D001251 ORTHO05D004135 2.9e-22 110.9 519 28.7
GSVIVG01027456001 Vitis vinifera HOM05D001251 ORTHO05D004135 3.2e-21 107.5 150 48.7
HanXRQChr15g0489571 Helianthus annuus HOM05D001251 ORTHO05D004135 1.8e-19 101.7 548 31.2
CDE12G0822 Ceratophyllum demersum HOM05D001251 ORTHO05D004135 2.3e-19 101.3 287 37.6
C07p03620 Brassica napus HOM05D001251 ORTHO05D004135 2.0e-18 98.2 549 31.0
SGA_v2.0_scaffold43G16339 Striga asiatica HOM05D000071 ORTHO05D000029 3.3e-18 97.4 317 35.6
BcaC06g36496 Brassica carinata HOM05D001251 ORTHO05D004135 2.2e-17 94.7 194 41.8
Actinidia28507 Actinidia chinensis HOM05D001251 ORTHO05D004135 6.3e-17 93.2 508 29.3
Hund27142 Selenicereus undatus HOM05D001251 ORTHO05D004135 9.1e-16 89.4 563 26.8
BcaC07g37015 Brassica carinata HOM05D001251 ORTHO05D004135 4.5e-15 87.0 193 40.4
Prupe.2G200300 Prunus persica HOM05D001251 ORTHO05D004135 5.9e-15 86.7 430 29.1
Aqoxy7G03772 Aquilegia oxysepala HOM05D001251 ORTHO05D004135 7.7e-15 86.3 227 34.4
C08p00060 Brassica napus HOM05D001251 ORTHO05D004135 1.1e-13 82.4 151 41.7
BcaC06g36495 Brassica carinata HOM05D001251 ORTHO05D004135 4.2e-13 80.5 252 34.1
Dinv32651 Davidia involucrata HOM05D001251 ORTHO05D004135 7.2e-13 79.7 146 43.2
Lsat_1_v5_gn_3_140720 Lactuca sativa HOM05D001251 ORTHO05D004135 2.7e-12 77.8 689 24.8
C07p03630 Brassica napus HOM05D001251 ORTHO05D004135 6.1e-12 76.6 250 32.4
Atru.chr5.787 Acer truncatum HOM05D001251 ORTHO05D000619 2.3e-11 74.7 56 64.3
SEGI_18839 Sequoiadendron giganteum HOM05D001251 ORTHO05D004135 3.7e-09 67.4 70 51.4
FAN02G3085 Fragaria x ananassa HOM05D001251 ORTHO05D004135 8.2e-09 66.2 59 55.9
FAN03G1652 Fragaria x ananassa HOM05D001251 ORTHO05D004135 8.2e-09 66.2 59 55.9
FAN17G2333 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.1e-08 65.9 58 55.2
TAR375G0744 Trochodendron aralioides HOM05D001251 ORTHO05D004135 1.6e-07 62.0 122 38.5
FAN24G2965 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.5e-07 60.8 58 51.7
Oeu053268.1 Olea europaea HOM05D001251 ORTHO05D004135 7.7e-07 59.7 58 58.6
AagrBONN_evm.TU.Sc2ySwM_228.5574 Anthoceros agrestis HOM05D001251 ORTHO05D000619 3.8e-06 57.4 46 63.0


User provided reference genes

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