Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR141690 Cardamine hirsuta HOM05D002680 ORTHO05D001151 1.3e-17 92.0 48 100.0
AT2G46410 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 4.9e-17 90.1 48 97.9
Carub.0004s2911 Capsella rubella HOM05D002680 ORTHO05D001151 4.9e-17 90.1 48 97.9
Thhalv10001695m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 4.9e-17 90.1 48 97.9
Sp4g28430 Schrenkiella parvula HOM05D002680 ORTHO05D001151 4.9e-17 90.1 48 97.9
THA.LOC104827629 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 7.1e-16 86.3 48 93.8
BcaB06g29488 Brassica carinata HOM05D002680 ORTHO05D001151 2.7e-15 84.3 49 93.9
BcaC01g05068 Brassica carinata HOM05D002680 ORTHO05D001151 6.0e-15 83.2 49 91.8
A03p25640 Brassica napus HOM05D002680 ORTHO05D001151 6.0e-15 83.2 49 91.8
C04p72160 Brassica napus HOM05D002680 ORTHO05D001151 6.0e-15 83.2 49 91.8
BolC4t28704H Brassica oleracea HOM05D002680 ORTHO05D001151 6.0e-15 83.2 49 91.8
BraA03t11779Z Brassica rapa HOM05D002680 ORTHO05D001151 6.0e-15 83.2 49 91.8
BcaC02g07029 Brassica carinata HOM05D002680 ORTHO05D001151 7.9e-15 82.8 49 89.8
Aa31LG1G27750 Aethionema arabicum HOM05D002680 ORTHO05D001151 1.0e-14 82.4 48 91.7
BcaC02g12684 Brassica carinata HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
BcaC02g12686 Brassica carinata HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
BcaC02g12805 Brassica carinata HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
A05p01360 Brassica napus HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
C04p01540 Brassica napus HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
BolC4t21805H Brassica oleracea HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
BraA05t19134Z Brassica rapa HOM05D002680 ORTHO05D001151 1.0e-14 82.4 49 91.8
BcaB06g29487 Brassica carinata HOM05D002680 ORTHO05D001151 1.8e-14 81.6 49 89.8
A04p34360 Brassica napus HOM05D002680 ORTHO05D001151 1.8e-14 81.6 49 89.8
BraA04t18897Z Brassica rapa HOM05D002680 ORTHO05D001151 1.8e-14 81.6 49 89.8
BolC3t15409H Brassica oleracea HOM05D002680 ORTHO05D001151 2.3e-14 81.3 49 89.8
CiPaw.02G039400 Carya illinoinensis HOM05D002680 ORTHO05D001151 3.7e-12 73.9 48 75.0
Duzib138G1059 Durio zibethinus HOM05D002680 ORTHO05D001151 6.2e-12 73.2 48 75.0
Prupe.2G185200 Prunus persica HOM05D002680 ORTHO05D001151 6.2e-12 73.2 48 75.0
Thecc.01G345200 Theobroma cacao HOM05D002680 ORTHO05D001151 6.2e-12 73.2 48 75.0
Atru.chr5.641 Acer truncatum HOM05D002680 ORTHO05D001151 1.1e-11 72.4 48 75.0
Cfa003823 Carpinus fangiana HOM05D002680 ORTHO05D001151 2.4e-11 71.2 48 75.0
COL.COLO4_06311 Corchorus olitorius HOM05D002680 ORTHO05D001151 3.1e-11 70.9 47 74.5
PGR042G1737 Punica granatum HOM05D002680 ORTHO05D001151 4.0e-11 70.5 47 72.3
QL04p056804 Quercus lobata HOM05D002680 ORTHO05D001151 1.2e-10 68.9 48 72.9
Duzib133G0158 Durio zibethinus HOM05D002680 ORTHO05D001151 1.5e-10 68.6 48 72.9
Gohir.A07G138700 Gossypium hirsutum HOM05D002680 ORTHO05D001151 2.0e-10 68.2 48 70.8
Gohir.D07G143800 Gossypium hirsutum HOM05D002680 ORTHO05D001151 2.0e-10 68.2 48 70.8
Gorai.001G155700 Gossypium raimondii HOM05D002680 ORTHO05D001151 2.0e-10 68.2 48 70.8
Manes.05G024900 Manihot esculenta HOM05D002680 ORTHO05D001151 2.0e-10 68.2 48 72.9
Gohir.A11G096200 Gossypium hirsutum HOM05D002680 ORTHO05D001151 2.6e-10 67.8 48 70.8
Gohir.D11G100900 Gossypium hirsutum HOM05D002680 ORTHO05D001151 5.8e-10 66.6 48 68.8
Gorai.007G107400 Gossypium raimondii HOM05D002680 ORTHO05D001151 5.8e-10 66.6 48 68.8
CiPaw.11G122900 Carya illinoinensis HOM05D002680 ORTHO05D001151 7.6e-10 66.2 50 72.0
Actinidia27327 Actinidia chinensis HOM05D002680 ORTHO05D001151 1.0e-09 65.9 48 64.6
Nn3g19058 Nelumbo nucifera HOM05D002680 ORTHO05D001151 1.0e-09 65.9 48 70.8
QL02p031030 Quercus lobata HOM05D002680 ORTHO05D001151 1.3e-09 65.5 46 69.6
GSVIVG01027071001 Vitis vinifera HOM05D002680 ORTHO05D001151 1.3e-09 65.5 49 69.4
Carub.0005s2840 Capsella rubella HOM05D000008 ORTHO05D001151 1.7e-09 65.1 50 72.0
CiPaw.01G074100 Carya illinoinensis HOM05D002680 ORTHO05D001151 1.7e-09 65.1 49 69.4
Cfa022931 Carpinus fangiana HOM05D002680 ORTHO05D001151 2.2e-09 64.7 48 70.8
Eucgr.E00069 Eucalyptus grandis HOM05D002680 ORTHO05D001151 2.2e-09 64.7 49 67.3
TWI15G1123 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 2.2e-09 64.7 48 64.6
TAR629G1715 Trochodendron aralioides HOM05D002680 ORTHO05D001151 2.2e-09 64.7 48 68.8
PSO135G1041 Papaver somniferum HOM05D002680 ORTHO05D001151 2.9e-09 64.3 49 73.5
PSO384G2121 Papaver somniferum HOM05D002680 ORTHO05D001151 2.9e-09 64.3 49 73.5
Nn1g01828 Nelumbo nucifera HOM05D002680 ORTHO05D001151 3.8e-09 63.9 47 72.3
Actinidia22726 Actinidia chinensis HOM05D002680 ORTHO05D001151 4.9e-09 63.5 48 60.4
CSS0017773 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 4.9e-09 63.5 50 68.0
vmacro13176 Vaccinium macrocarpon HOM05D002680 ORTHO05D001151 4.9e-09 63.5 52 63.5
FvH4_7g16170 Fragaria vesca HOM05D002680 ORTHO05D001151 8.4e-09 62.8 47 72.3
Manes.01G247600 Manihot esculenta HOM05D002680 ORTHO05D001151 8.4e-09 62.8 48 68.8
RcHm_v2.0_Chr1g0359121 Rosa chinensis HOM05D002680 ORTHO05D001151 8.4e-09 62.8 47 72.3
TWI60G1384 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 8.4e-09 62.8 48 66.7
AL5G44160 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 1.1e-08 62.4 49 71.4
CDE02G2614 Ceratophyllum demersum HOM05D002680 ORTHO05D001151 1.1e-08 62.4 48 66.7
Dinv18728 Davidia involucrata HOM05D002680 ORTHO05D001151 1.1e-08 62.4 49 67.3
Eucgr.D02360 Eucalyptus grandis HOM05D002680 ORTHO05D001151 1.1e-08 62.4 48 62.5
Aqoxy5G04173 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 1.4e-08 62.0 48 66.7
Potri.014G096300 Populus trichocarpa HOM05D002680 ORTHO05D001151 1.4e-08 62.0 49 65.3
Sabra02G0143100 Salix brachista HOM05D002680 ORTHO05D001151 1.4e-08 62.0 49 67.3
vmacro13903 Vaccinium macrocarpon HOM05D002680 ORTHO05D001151 1.4e-08 62.0 49 65.3
CSS0015793 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 1.9e-08 61.6 50 66.0
AL4G45710 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 2.5e-08 61.2 33 97.0
Thecc.03G295000 Theobroma cacao HOM05D002680 ORTHO05D001151 2.5e-08 61.2 48 62.5
CSS0015923 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 3.2e-08 60.8 50 64.0
CSS0031622 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 3.2e-08 60.8 50 64.0
Potri.002G168900 Populus trichocarpa HOM05D002680 ORTHO05D001151 3.2e-08 60.8 61 55.7
THA.LOC104817050 Tarenaya hassleriana HOM05D000008 ORTHO05D001151 3.2e-08 60.8 51 68.6
Actinidia28498 Actinidia chinensis HOM05D002680 ORTHO05D001151 4.2e-08 60.5 50 66.0
PGR142G2074 Punica granatum HOM05D002680 ORTHO05D001151 4.2e-08 60.5 52 67.3
GSVIVG01028716001 Vitis vinifera HOM05D002680 ORTHO05D001151 4.2e-08 60.5 49 69.4
BcaB01g04232 Brassica carinata HOM05D002680 ORTHO05D001151 5.5e-08 60.1 46 65.2
BcaC01g06229 Brassica carinata HOM05D002680 ORTHO05D001151 5.5e-08 60.1 46 65.2
C03p17900 Brassica napus HOM05D002680 ORTHO05D001151 5.5e-08 60.1 46 65.2
A03p15300 Brassica napus HOM05D002680 ORTHO05D001151 7.1e-08 59.7 46 65.2
BolC3t14195H Brassica oleracea HOM05D002680 ORTHO05D001151 7.1e-08 59.7 46 65.2
BraA03t10823Z Brassica rapa HOM05D002680 ORTHO05D001151 7.1e-08 59.7 46 65.2
CDE08G1645 Ceratophyllum demersum HOM05D000257 ORTHO05D003333 7.1e-08 59.7 48 64.6
Sabra15G0016400 Salix brachista HOM05D002680 ORTHO05D001151 9.3e-08 59.3 49 67.3
AL8G27860 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 1.2e-07 58.9 46 65.2
Cpa.g.c29502 Carica papaya HOM05D002680 ORTHO05D001151 1.2e-07 58.9 49 65.3
Potri.015G022000 Populus trichocarpa HOM05D002680 ORTHO05D001151 1.2e-07 58.9 46 65.2
AT5G53200 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 1.6e-07 58.5 46 65.2
BcaC02g07031 Brassica carinata HOM05D000354 ORTHO05D000717 1.6e-07 58.5 31 93.5
C09p42990 Brassica napus HOM05D002680 ORTHO05D001151 1.6e-07 58.5 46 65.2
Eucgr.E00851 Eucalyptus grandis HOM05D002680 ORTHO05D001151 1.6e-07 58.5 50 62.0
Carub.0008s1340 Capsella rubella HOM05D002680 ORTHO05D001151 2.7e-07 57.8 46 65.2
AT4G01060 Arabidopsis thaliana HOM05D000008 ORTHO05D001151 3.5e-07 57.4 48 64.6
Sp1g00910 Schrenkiella parvula HOM05D002680 ORTHO05D001151 3.5e-07 57.4 51 60.8
Sp6g15380 Schrenkiella parvula HOM05D002680 ORTHO05D001151 3.5e-07 57.4 46 63.0
A10p10710 Brassica napus HOM05D002680 ORTHO05D001151 4.6e-07 57.0 46 63.0
BraA10t43152Z Brassica rapa HOM05D002680 ORTHO05D001151 4.6e-07 57.0 46 63.0
Carub.0004s1158 Capsella rubella HOM05D002680 ORTHO05D001151 4.6e-07 57.0 45 66.7
FAN06G1775 Fragaria x ananassa HOM05D002680 ORTHO05D001151 4.6e-07 57.0 46 67.4
THA.LOC104825134 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 4.6e-07 57.0 46 63.0
THA.LOC104825874 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 4.6e-07 57.0 52 63.5
Aa31LG1G10950 Aethionema arabicum HOM05D002680 ORTHO05D001151 6.0e-07 56.6 54 63.0
CARHR249240 Cardamine hirsuta HOM05D000008 ORTHO05D001151 6.0e-07 56.6 51 62.7
CiPaw.05G257600 Carya illinoinensis HOM05D002680 ORTHO05D001151 6.0e-07 56.6 48 58.3
Carub.0006s3612 Capsella rubella HOM05D000008 ORTHO05D001151 7.9e-07 56.2 50 60.0
LjContig00312_ERROPOS870357g0002853 Lotus japonicus HOM05D002680 ORTHO05D001151 7.9e-07 56.2 52 61.5
AL136U10030 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 1.0e-06 55.8 33 78.8
arahy.Tifrunner.gnm1.ann1.SWV57T Arachis hypogaea HOM05D002680 ORTHO05D001151 1.0e-06 55.8 53 60.4
arahy.Tifrunner.gnm1.ann1.XL6SY1 Arachis hypogaea HOM05D002680 ORTHO05D001151 1.0e-06 55.8 53 60.4
Thhalv10029104m.g Eutrema salsugineum HOM05D000008 ORTHO05D001151 1.0e-06 55.8 38 68.4
Manes.06G157500 Manihot esculenta HOM05D002680 ORTHO05D001151 1.0e-06 55.8 43 65.1
AL1G11070 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 1.3e-06 55.5 36 72.2
AT1G01380 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 1.3e-06 55.5 36 72.2
THA.LOC104811933 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 1.3e-06 55.5 46 60.9
Aa31LG5G900 Aethionema arabicum HOM05D002680 ORTHO05D001151 1.8e-06 55.1 56 60.7
MD06G1104200 Malus domestica HOM05D002680 ORTHO05D001151 1.8e-06 55.1 52 57.7
Sabra12G0020800 Salix brachista HOM05D002680 ORTHO05D001151 1.8e-06 55.1 50 64.0
TWI14G1015 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 1.8e-06 55.1 46 58.7
Aqoxy7G00139 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 2.3e-06 54.7 48 54.2
BcaC03g14444 Brassica carinata HOM05D002680 ORTHO05D001151 2.3e-06 54.7 46 58.7
C02p18580 Brassica napus HOM05D002680 ORTHO05D001151 2.3e-06 54.7 46 58.7
BolC2t08000H Brassica oleracea HOM05D002680 ORTHO05D001151 2.3e-06 54.7 46 58.7
BcaC01g06841 Brassica carinata HOM05D002680 ORTHO05D001151 3.0e-06 54.3 52 59.6
A03p31820 Brassica napus HOM05D002680 ORTHO05D001151 3.0e-06 54.3 52 59.6
A03p31830 Brassica napus HOM05D002680 ORTHO05D001151 3.0e-06 54.3 52 59.6
C03p38840 Brassica napus HOM05D002680 ORTHO05D001151 3.0e-06 54.3 52 59.6
BolC3t16158H Brassica oleracea HOM05D002680 ORTHO05D001151 3.0e-06 54.3 52 59.6
BraA02t06184Z Brassica rapa HOM05D002680 ORTHO05D001151 3.0e-06 54.3 46 58.7
Thhalv10009233m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 3.0e-06 54.3 53 56.6
Potri.012G031200 Populus trichocarpa HOM05D002680 ORTHO05D001151 3.0e-06 54.3 41 68.3
THA.LOC104800287 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 3.0e-06 54.3 46 63.0
AL4G25290 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 3.9e-06 53.9 33 75.8
AT2G30420 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 3.9e-06 53.9 33 75.8
Ciclev10024111m.g Citrus clementina HOM05D002680 ORTHO05D001151 3.9e-06 53.9 50 64.0
Thhalv10015741m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 3.9e-06 53.9 39 69.2
SalBow5G2861 Salvia bowleyana HOM05D002680 ORTHO05D001151 3.9e-06 53.9 49 61.2
Aa31LG3G9280 Aethionema arabicum HOM05D002680 ORTHO05D001151 5.1e-06 53.5 33 75.8
CANSAT56G0405 Cannabis sativa HOM05D002680 ORTHO05D001151 5.1e-06 53.5 52 61.5
Ciclev10006315m.g Citrus clementina HOM05D002680 ORTHO05D001151 5.1e-06 53.5 46 58.7
Duzib084G1355 Durio zibethinus HOM05D002680 ORTHO05D001151 5.1e-06 53.5 49 61.2
FAN03G1631 Fragaria x ananassa HOM05D002680 ORTHO05D001151 5.1e-06 53.5 48 64.6
CARHR001060 Cardamine hirsuta HOM05D002680 ORTHO05D001151 6.7e-06 53.1 53 54.7
CARHR123870 Cardamine hirsuta HOM05D002680 ORTHO05D001151 6.7e-06 53.1 45 62.2
Cfa016365 Carpinus fangiana HOM05D002680 ORTHO05D001151 6.7e-06 53.1 46 58.7
CDE10G0523 Ceratophyllum demersum HOM05D002680 ORTHO05D001151 6.7e-06 53.1 46 58.7
FAN01G0337 Fragaria x ananassa HOM05D002680 ORTHO05D001151 6.7e-06 53.1 31 80.6
FAN06G3883 Fragaria x ananassa HOM05D002680 ORTHO05D001151 6.7e-06 53.1 31 80.6
FAN10G3163 Fragaria x ananassa HOM05D002680 ORTHO05D001151 6.7e-06 53.1 31 80.6
FAN10G3947 Fragaria x ananassa HOM05D002680 ORTHO05D001151 6.7e-06 53.1 31 80.6
PGR031G2198 Punica granatum HOM05D002680 ORTHO05D001151 6.7e-06 53.1 51 56.9
BcaC07g42358 Brassica carinata HOM05D002680 ORTHO05D001151 8.7e-06 52.8 55 56.4
A09p69090 Brassica napus HOM05D002680 ORTHO05D001151 8.7e-06 52.8 55 56.4
C08p53660 Brassica napus HOM05D002680 ORTHO05D001151 8.7e-06 52.8 55 56.4
BolC8t52880H Brassica oleracea HOM05D002680 ORTHO05D001151 8.7e-06 52.8 55 56.4
BraA09t42246Z Brassica rapa HOM05D002680 ORTHO05D001151 8.7e-06 52.8 55 56.4
FAN03G2071 Fragaria x ananassa HOM05D002680 ORTHO05D001151 8.7e-06 52.8 29 86.2
FAN10G0893 Fragaria x ananassa HOM05D002680 ORTHO05D001151 8.7e-06 52.8 49 61.2
FAN10G1630 Fragaria x ananassa HOM05D002680 ORTHO05D001151 8.7e-06 52.8 49 61.2
Rhsim07G0083000 Rhododendron simsii HOM05D002680 ORTHO05D001151 8.7e-06 52.8 48 54.2
SHI13236 Sapria himalayana HOM05D002680 ORTHO05D001151 8.7e-06 52.8 31 80.6
Sc13g0009610 Simmondsia chinensis HOM05D002680 ORTHO05D001151 8.7e-06 52.8 48 54.2
Thecc.03G193400 Theobroma cacao HOM05D002680 ORTHO05D001151 8.7e-06 52.8 46 58.7


User provided reference genes

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