Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 6.0e-175 617.5 322 100.0
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 8.4e-153 543.9 317 89.3
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.7e-151 538.9 323 87.0
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 3.9e-150 535.0 320 87.2
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.8e-148 528.9 320 85.6
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 4.0e-147 525.0 323 83.9
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.2e-144 515.4 320 83.8
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-143 513.1 323 82.0
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.6e-143 513.1 323 82.0
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 7.9e-143 510.8 323 82.0
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.0e-142 510.4 323 82.0
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-142 509.6 323 82.4
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 3.0e-142 508.8 323 82.0
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.9e-142 508.4 323 81.7
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 4.3e-141 505.0 323 80.8
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 4.3e-141 505.0 323 80.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 2.1e-140 502.7 325 81.5
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 7.6e-138 494.2 323 80.5
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 7.1e-136 487.6 341 76.2
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.5e-133 479.9 321 76.6
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.5e-128 462.6 323 75.2
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.3e-123 444.9 324 71.9
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.8e-122 441.4 324 71.3
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.3e-121 440.3 324 71.3
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.4e-120 436.8 325 72.6
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 5.5e-120 434.9 319 70.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.1e-119 431.4 325 70.8
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 3.0e-118 429.1 321 70.1
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 2.2e-116 422.9 324 69.1
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 2.8e-116 422.5 311 71.4
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.2e-114 417.2 311 70.4
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.3e-113 413.7 286 74.8
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.8e-113 412.1 304 70.1
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 6.5e-113 411.4 308 69.5
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.4e-112 410.2 320 66.6
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 7.2e-112 407.9 324 67.0
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 9.4e-112 407.5 321 67.0
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 9.4e-112 407.5 318 67.9
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.7e-111 406.0 324 69.4
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 2.7e-111 406.0 318 67.6
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.7e-111 406.0 318 67.9
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.7e-111 406.0 306 69.0
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 3.6e-111 405.6 323 69.3
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.6e-111 405.6 320 67.2
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.8e-110 403.3 321 63.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.3e-110 402.9 321 63.9
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.3e-110 402.9 321 63.9
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 5.1e-110 401.7 313 66.1
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 5.1e-110 401.7 320 65.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 5.1e-110 401.7 311 67.5
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-109 400.6 326 69.6
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.1e-109 400.6 321 63.6
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.1e-109 400.6 311 67.8
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.5e-109 400.2 321 65.4
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.5e-109 400.2 310 66.5
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.0e-109 399.8 317 66.2
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 2.0e-109 399.8 321 63.6
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.3e-109 399.1 322 65.5
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.3e-109 399.1 321 65.7
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 5.7e-109 398.3 321 67.3
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 7.4e-109 397.9 286 69.6
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.3e-108 397.1 305 67.9
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.7e-108 396.7 309 67.6
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.4e-107 393.7 313 65.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.8e-107 393.3 292 69.5
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.8e-107 393.3 297 67.7
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 3.1e-107 392.5 313 66.8
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.1e-107 392.5 313 65.8
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 6.9e-107 391.3 315 67.9
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 2.0e-106 389.8 308 64.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 4.5e-106 388.7 308 64.9
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 4.5e-106 388.7 326 64.1
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 7.7e-106 387.9 313 63.6
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 7.7e-106 387.9 310 64.5
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.7e-105 386.7 321 62.0
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 2.2e-105 386.3 313 65.8
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 1.4e-104 383.6 320 62.2
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.5e-104 382.9 313 62.6
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.5e-104 382.9 322 63.0
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 5.5e-104 381.7 303 64.4
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 9.4e-104 380.9 314 64.3
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 9.4e-104 380.9 291 66.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.2e-103 380.6 259 73.7
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.6e-103 380.2 291 64.9
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.6e-103 380.2 323 63.2
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.6e-103 380.2 321 63.2
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 2.1e-103 379.8 323 62.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 2.1e-103 379.8 313 65.8
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.7e-103 379.4 322 62.7
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 3.6e-103 379.0 289 65.7
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 7.9e-103 377.9 313 62.0
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.3e-102 376.3 314 63.1
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 3.0e-102 375.9 292 64.7
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.0e-102 375.9 313 64.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 8.8e-102 374.4 314 63.7
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.1e-101 374.0 318 62.3
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 2.0e-101 373.2 286 67.1
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 7.4e-101 371.3 347 60.5
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 9.7e-101 370.9 293 63.5
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 9.7e-101 370.9 295 64.1
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-100 370.2 314 62.7
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.1e-99 367.5 315 61.0
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.8e-99 366.7 322 60.9
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 3.1e-99 365.9 317 59.9
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.3e-99 365.2 313 62.3
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 5.3e-99 365.2 349 57.3
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 9.1e-99 364.4 311 61.7
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.2e-98 364.0 303 61.7
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.6e-98 362.8 319 63.6
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.6e-98 362.8 314 64.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.7e-97 360.1 304 62.5
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.2e-97 359.8 323 61.0
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.9e-97 359.4 319 59.6
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.8e-97 359.0 389 54.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 5.0e-97 358.6 313 62.3
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 8.5e-97 357.8 315 60.3
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.1e-96 357.5 316 58.9
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.2e-96 355.9 313 59.4
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 8.0e-95 351.3 304 61.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.1e-93 347.4 304 63.2
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 7.5e-93 344.7 322 59.0
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 7.5e-93 344.7 330 59.1
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.3e-92 344.0 269 69.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.8e-92 342.8 396 50.3
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 9.1e-91 337.8 227 82.4
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.1e-91 337.8 375 53.9
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.2e-88 329.3 300 57.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 3.2e-88 329.3 291 58.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.0e-86 322.4 296 55.7
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 8.8e-86 321.2 341 54.3
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 8.8e-86 321.2 313 53.7
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 3.4e-85 319.3 262 69.5
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 5.7e-85 318.5 322 56.8
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.1e-80 304.3 322 56.8
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.5e-80 303.9 312 54.5
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 2.5e-80 303.1 242 71.1
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 9.8e-77 291.2 331 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.6e-74 283.9 294 52.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.5e-74 282.3 312 50.3
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 3.6e-71 272.7 158 83.5
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.0e-70 269.2 180 81.7
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 4.4e-69 265.8 284 51.8
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 7.5e-69 265.0 252 54.0
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 9.8e-69 264.6 293 50.9
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.2e-59 231.5 173 68.2
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 3.3e-56 223.0 166 67.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.4e-51 206.8 318 41.8
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.0e-49 201.4 143 75.5
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.6e-47 194.1 297 40.1
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.6e-47 193.0 143 75.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.9e-41 172.9 178 55.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.2e-36 157.1 168 57.1
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.0e-33 148.3 153 59.5
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.5e-32 144.4 291 38.1
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.9e-32 144.1 83 80.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 8.4e-28 128.6 306 33.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-26 124.8 107 66.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.5e-26 123.2 99 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.5e-18 96.7 107 47.7
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.6e-18 96.3 67 65.7
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.8e-14 84.3 89 51.7
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 8.4e-12 75.5 61 65.6
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.5e-08 64.7 56 57.1
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 4.3e-08 63.2 56 55.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 7.4e-08 62.4 38 81.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.8e-06 57.8 43 65.1


User provided reference genes

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