Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR118710 Cardamine hirsuta HOM05D001959 ORTHO05D001955 5.7e-65 250.8 125 100.0
AT5G60170 Arabidopsis thaliana HOM05D001959 ORTHO05D001955 2.4e-31 139.0 125 64.8
Carub.0008s2090 Capsella rubella HOM05D001959 ORTHO05D001955 2.4e-31 139.0 125 64.0
C03p13080 Brassica napus HOM05D001959 ORTHO05D001955 2.0e-30 136.0 125 62.4
BolC3t13771H Brassica oleracea HOM05D001959 ORTHO05D001955 2.0e-30 136.0 125 62.4
BraA03t10447Z Brassica rapa HOM05D001959 ORTHO05D001955 2.0e-30 136.0 125 62.4
AL8G36780 Arabidopsis lyrata HOM05D001959 ORTHO05D001955 2.7e-30 135.6 125 62.4
Thhalv10012563m.g Eutrema salsugineum HOM05D001959 ORTHO05D001955 3.8e-29 131.7 126 61.9
Thhalv10012567m.g Eutrema salsugineum HOM05D001959 ORTHO05D001955 3.8e-29 131.7 126 61.9
BcaC04g19661 Brassica carinata HOM05D001959 ORTHO05D001955 7.3e-28 127.5 122 60.7
C09p52650 Brassica napus HOM05D001959 ORTHO05D001955 2.1e-27 125.9 118 61.0
BolC9t58132H Brassica oleracea HOM05D001959 ORTHO05D001955 2.1e-27 125.9 118 61.0
BraA08t33074Z Brassica rapa HOM05D001959 ORTHO05D001955 2.8e-27 125.6 125 58.4
BcaB01g06358 Brassica carinata HOM05D001959 ORTHO05D001955 6.1e-27 124.4 109 66.1
Aa31LG1G12340 Aethionema arabicum HOM05D001959 ORTHO05D001955 1.4e-26 123.2 130 56.2
A08p10770 Brassica napus HOM05D001959 ORTHO05D001955 1.8e-26 122.9 125 57.6
BcaB05g22626 Brassica carinata HOM05D001959 ORTHO05D001955 5.2e-26 121.3 124 60.5
A03p11330 Brassica napus HOM05D001959 ORTHO05D001955 3.4e-25 118.6 126 57.1
C03p13060 Brassica napus HOM05D001959 ORTHO05D001955 3.4e-25 118.6 126 55.6
BolC3t13769H Brassica oleracea HOM05D001959 ORTHO05D001955 3.4e-25 118.6 126 55.6
AL5G24250 Arabidopsis lyrata HOM05D001959 ORTHO05D001955 1.2e-22 110.2 130 51.5
AT3G45630 Arabidopsis thaliana HOM05D001959 ORTHO05D001955 2.3e-21 105.9 130 49.2
Carub.0005s1148 Capsella rubella HOM05D001959 ORTHO05D001955 3.9e-21 105.1 130 49.2
AL8G10110 Arabidopsis lyrata HOM05D001959 ORTHO05D001955 6.6e-21 104.4 126 50.0
BolC3t19266H Brassica oleracea HOM05D001959 ORTHO05D001955 8.0e-19 97.4 130 50.0
A06p21320 Brassica napus HOM05D001959 ORTHO05D001955 1.4e-18 96.7 130 46.9
BraA06t25220Z Brassica rapa HOM05D001959 ORTHO05D001955 1.8e-18 96.3 130 48.5
BcaB01g01080 Brassica carinata HOM05D001959 ORTHO05D001955 5.2e-18 94.7 124 46.0
BcaC01g01962 Brassica carinata HOM05D001959 ORTHO05D001955 1.2e-17 93.6 130 49.2
C03p70080 Brassica napus HOM05D001959 ORTHO05D001955 1.2e-17 93.6 130 49.2
Medtr2g093100 Medicago truncatula HOM05D001959 ORTHO05D001955 2.0e-17 92.8 133 46.6
Lj3g0005960 Lotus japonicus HOM05D001959 ORTHO05D001955 5.8e-17 91.3 130 46.9
Atru.chr3.3737 Acer truncatum HOM05D001959 ORTHO05D001955 2.9e-16 89.0 130 43.8
CSS0003965 Camellia sinensis var. sinensis HOM05D001959 ORTHO05D001955 4.9e-16 88.2 128 46.1
Ca_19232_v3 Cicer arietinum L. HOM05D001959 ORTHO05D001955 8.3e-16 87.4 130 46.2
Potri.009G026200 Populus trichocarpa HOM05D001959 ORTHO05D001955 1.1e-15 87.0 129 45.0
arahy.Tifrunner.gnm1.ann1.L7TZBM Arachis hypogaea HOM05D001959 ORTHO05D001955 1.9e-15 86.3 131 47.3
arahy.Tifrunner.gnm1.ann1.XKSF6X Arachis hypogaea HOM05D001959 ORTHO05D001955 2.4e-15 85.9 131 47.3
Ciclev10027731m.g Citrus clementina HOM05D001959 ORTHO05D001955 2.4e-15 85.9 130 43.1
Phvul.L000154 Phaseolus vulgaris HOM05D001959 ORTHO05D001955 3.2e-15 85.5 133 43.6
Thecc.09G336200 Theobroma cacao HOM05D001959 ORTHO05D001955 3.2e-15 85.5 131 45.0
TPR.G11610 Trifolium pratense HOM05D001959 ORTHO05D001955 3.2e-15 85.5 133 44.4
EL10Ac9g22397 Beta vulgaris HOM05D001959 ORTHO05D001955 4.1e-15 85.1 130 43.8
GSVIVG01025102001 Vitis vinifera HOM05D001959 ORTHO05D001955 4.1e-15 85.1 130 43.8
Aa31LG4G14820 Aethionema arabicum HOM05D001959 ORTHO05D001955 5.4e-15 84.7 130 44.6
Ca_01445_v3 Cicer arietinum L. HOM05D001959 ORTHO05D001955 5.4e-15 84.7 132 44.7
Glyma.12G073200 Glycine max HOM05D001959 ORTHO05D001955 5.4e-15 84.7 130 43.1
Lalb_Chr19g0137531 Lupinus albus HOM05D001959 ORTHO05D001955 7.0e-15 84.3 130 43.8
Peaxi162Scf00389g00212 Petunia axillaris HOM05D001959 ORTHO05D001955 9.2e-15 84.0 130 45.4
QL01p035905 Quercus lobata HOM05D001959 ORTHO05D001955 9.2e-15 84.0 130 42.3
Glyma.11G150034 Glycine max HOM05D001959 ORTHO05D001955 1.2e-14 83.6 129 42.6
CANSAT54G1232 Cannabis sativa HOM05D001959 ORTHO05D001955 1.6e-14 83.2 130 43.8
VMungo1127G1737 Vigna mungo HOM05D001959 ORTHO05D001955 1.6e-14 83.2 130 43.1
Actinidia03757 Actinidia chinensis HOM05D001959 ORTHO05D001955 2.1e-14 82.8 134 43.3
Dinv06354 Davidia involucrata HOM05D001959 ORTHO05D001955 2.7e-14 82.4 133 43.6
Lj1C181T4 Lonicera japonica HOM05D001959 ORTHO05D001955 2.7e-14 82.4 130 41.5
TWI75G0843 Tripterygium wilfordii HOM05D001959 ORTHO05D001955 3.5e-14 82.0 130 40.8
Nn2g10631 Nelumbo nucifera HOM05D001959 ORTHO05D001955 4.6e-14 81.6 130 41.5
Phvul.011G071200 Phaseolus vulgaris HOM05D001959 ORTHO05D001955 4.6e-14 81.6 130 42.3
AUR62025044 Chenopodium quinoa HOM05D001959 ORTHO05D001955 6.0e-14 81.3 130 41.5
Cc01_g11820 Coffea canephora HOM05D001959 ORTHO05D001955 7.8e-14 80.9 130 43.1
Duzib168G1585 Durio zibethinus HOM05D001959 ORTHO05D001955 7.8e-14 80.9 130 41.5
Lalb_Chr14g0374841 Lupinus albus HOM05D001959 ORTHO05D001955 7.8e-14 80.9 130 43.8
Nitab4.5_0000533g0030 Nicotiana tabacum HOM05D001959 ORTHO05D001955 7.8e-14 80.9 130 43.1
Nitab4.5_0000888g0050 Nicotiana tabacum HOM05D001959 ORTHO05D001955 7.8e-14 80.9 130 43.1
Psat5g276760 Pisum sativum HOM05D001959 ORTHO05D001955 7.8e-14 80.9 132 43.9
TAR636G0263 Trochodendron aralioides HOM05D001959 ORTHO05D001955 7.8e-14 80.9 130 44.6
COL.COLO4_18383 Corchorus olitorius HOM05D001959 ORTHO05D001955 1.0e-13 80.5 130 40.0
Actinidia00815 Actinidia chinensis HOM05D001959 ORTHO05D001955 1.3e-13 80.1 137 43.8
Cpa.g.sc139.44 Carica papaya HOM05D001959 ORTHO05D001955 1.3e-13 80.1 133 42.9
MD11G1121300 Malus domestica HOM05D001959 ORTHO05D001955 1.3e-13 80.1 130 42.3
Duzib170G1143 Durio zibethinus HOM05D001959 ORTHO05D001955 1.7e-13 79.7 133 42.9
Lalb_Chr03g0027031 Lupinus albus HOM05D001959 ORTHO05D001955 1.7e-13 79.7 130 44.6
MD03G1108000 Malus domestica HOM05D001959 ORTHO05D001955 1.7e-13 79.7 131 42.0
THA.LOC104799481 Tarenaya hassleriana HOM05D001959 ORTHO05D001955 1.7e-13 79.7 130 43.1
Gorai.001G105300 Gossypium raimondii HOM05D001959 ORTHO05D001955 2.3e-13 79.3 130 40.8
Hma1.2p1_1731F.1_g299750 Hydrangea macrophylla HOM05D001959 ORTHO05D001955 2.3e-13 79.3 120 41.7
Prupe.6G091300 Prunus persica HOM05D001959 ORTHO05D001955 2.3e-13 79.3 133 42.1
RcHm_v2.0_Chr5g0061481 Rosa chinensis HOM05D001959 ORTHO05D001955 2.3e-13 79.3 130 41.5
Haze_23952 Corylus avellana HOM05D001959 ORTHO05D001955 3.0e-13 79.0 130 41.5
TPR.G2975 Trifolium pratense HOM05D001959 ORTHO05D001955 3.0e-13 79.0 130 41.5
Gohir.A13G229800 Gossypium hirsutum HOM05D001959 ORTHO05D001955 3.9e-13 78.6 133 44.4
Gohir.D13G235300 Gossypium hirsutum HOM05D001959 ORTHO05D001955 5.1e-13 78.2 130 40.8
AUR62025045 Chenopodium quinoa HOM05D001959 ORTHO05D001955 6.6e-13 77.8 130 41.5
FvH4_3g33920 Fragaria vesca HOM05D001959 ORTHO05D001955 6.6e-13 77.8 130 40.8
FAN11G3580 Fragaria x ananassa HOM05D001959 ORTHO05D001955 6.6e-13 77.8 130 40.8
FAN16G2581 Fragaria x ananassa HOM05D001959 ORTHO05D001955 6.6e-13 77.8 130 40.8
Gorai.009G104400 Gossypium raimondii HOM05D001959 ORTHO05D001955 6.6e-13 77.8 130 41.5
CsaV3_6G021850 Cucumis sativus L. HOM05D001959 ORTHO05D001955 8.6e-13 77.4 130 40.0
Gohir.A07G093300 Gossypium hirsutum HOM05D001959 ORTHO05D001955 8.6e-13 77.4 130 40.0
Gohir.D07G097900 Gossypium hirsutum HOM05D001959 ORTHO05D001955 8.6e-13 77.4 130 40.8
Gorai.013G266000 Gossypium raimondii HOM05D001959 ORTHO05D001955 8.6e-13 77.4 130 40.8
Lalb_Chr01g0004061 Lupinus albus HOM05D001959 ORTHO05D001955 1.1e-12 77.0 130 40.8
MELO3C025725.2 Cucumis melo HOM05D001959 ORTHO05D001955 1.5e-12 76.6 130 40.0
Nitab4.5_0003258g0010 Nicotiana tabacum HOM05D001959 ORTHO05D001955 1.5e-12 76.6 131 43.5
Glyma.15G044500 Glycine max HOM05D001959 ORTHO05D001955 1.9e-12 76.3 133 42.1
Lj2C1042G4 Lonicera japonica HOM05D001959 ORTHO05D001955 1.9e-12 76.3 132 43.2
ClCG02G020770 Citrullus lanatus HOM05D001959 ORTHO05D001955 2.5e-12 75.9 130 39.2
TAR633G1817 Trochodendron aralioides HOM05D001959 ORTHO05D001955 2.5e-12 75.9 130 43.1
CSS0023988 Camellia sinensis var. sinensis HOM05D001959 ORTHO05D001955 3.3e-12 75.5 136 41.9
AUR62006483 Chenopodium quinoa HOM05D001959 ORTHO05D001955 3.3e-12 75.5 130 41.5
TAR623G1444 Trochodendron aralioides HOM05D001959 ORTHO05D001955 4.3e-12 75.1 113 45.1
Medtr4g061180 Medicago truncatula HOM05D001959 ORTHO05D001955 7.3e-12 74.3 130 41.5
Sabra09G0017400 Salix brachista HOM05D001959 ORTHO05D001955 7.3e-12 74.3 130 40.8
TWI79G1131 Tripterygium wilfordii HOM05D001959 ORTHO05D001955 7.3e-12 74.3 134 39.6
FAN25G2198 Fragaria x ananassa HOM05D001959 ORTHO05D001955 9.5e-12 73.9 132 39.4
Sed0023055 Sechium edule HOM05D001959 ORTHO05D001955 9.5e-12 73.9 130 39.2
Lj3g0016662 Lotus japonicus HOM05D001959 ORTHO05D001955 1.2e-11 73.6 127 40.2
Ah.01g014730 Amaranthus hybridus HOM05D001959 ORTHO05D001955 1.6e-11 73.2 130 41.5
DCAR_018851 Daucus carota HOM05D001959 ORTHO05D001955 1.6e-11 73.2 130 39.2
Psat7g221920 Pisum sativum HOM05D001959 ORTHO05D001955 1.6e-11 73.2 131 42.0
Sed0025423 Sechium edule HOM05D001959 ORTHO05D001955 1.6e-11 73.2 130 40.8
VMungo1080G1499 Vigna mungo HOM05D001959 ORTHO05D001955 2.1e-11 72.8 135 40.0
DCAR_018847 Daucus carota HOM05D001959 ORTHO05D001955 2.8e-11 72.4 130 38.5
Manes.04G026900 Manihot esculenta HOM05D001959 ORTHO05D001955 1.4e-10 70.1 130 40.0
Nitab4.5_0000022g0320 Nicotiana tabacum HOM05D001959 ORTHO05D001955 6.8e-10 67.8 79 55.7
CiPaw.13G104900 Carya illinoinensis HOM05D001959 ORTHO05D001955 8.9e-10 67.4 122 38.5
Gohir.D08G008800 Gossypium hirsutum HOM05D001959 ORTHO05D001955 8.9e-10 67.4 133 39.1
Rhsim13G0090500 Rhododendron simsii HOM05D001959 ORTHO05D001955 8.9e-10 67.4 75 56.0
RhsimUnG0138900 Rhododendron simsii HOM05D001959 ORTHO05D001955 8.9e-10 67.4 75 56.0
AUR62006487 Chenopodium quinoa HOM05D001959 ORTHO05D001955 1.2e-09 67.0 71 53.5
Nn2g12973 Nelumbo nucifera HOM05D001959 ORTHO05D001955 1.2e-09 67.0 129 35.7
THA.LOC104826353 Tarenaya hassleriana HOM05D001959 ORTHO05D001955 2.6e-09 65.9 128 36.7
TAR369G0440 Trochodendron aralioides HOM05D001959 ORTHO05D001955 3.4e-09 65.5 130 38.5
FAN21G0873 Fragaria x ananassa HOM05D001959 ORTHO05D001955 4.4e-09 65.1 128 37.5
Gohir.A05G100500 Gossypium hirsutum HOM05D001959 ORTHO05D001955 4.4e-09 65.1 130 38.5
PGSC0003DMG400030059 Solanum tuberosum HOM05D001959 ORTHO05D001955 9.9e-09 63.9 130 41.5
Ciclev10010976m.g Citrus clementina HOM05D001959 ORTHO05D001955 1.3e-08 63.5 130 38.5
Dinv11816 Davidia involucrata HOM05D001959 ORTHO05D001955 1.3e-08 63.5 128 35.2
ECA247G3976 Erigeron canadensis HOM05D001959 ORTHO05D001955 1.3e-08 63.5 133 39.1
Migut.N02636 Erythranthe guttata HOM05D001959 ORTHO05D001955 1.3e-08 63.5 129 38.0
Actinidia07100 Actinidia chinensis HOM05D001959 ORTHO05D001955 2.2e-08 62.8 125 42.4
MSTRG.17855 Avicennia marina HOM05D001959 ORTHO05D001955 2.2e-08 62.8 130 40.0
Sc21g0000150 Simmondsia chinensis HOM05D001959 ORTHO05D001955 2.2e-08 62.8 130 37.7
vmacro03146 Vaccinium macrocarpon HOM05D001959 ORTHO05D001955 2.2e-08 62.8 75 53.3
SHI06012 Sapria himalayana HOM05D001959 ORTHO05D001955 2.9e-08 62.4 129 37.2
Manes.11G139600 Manihot esculenta HOM05D001959 ORTHO05D001955 3.7e-08 62.0 129 37.2
THA.LOC104810834 Tarenaya hassleriana HOM05D001959 ORTHO05D001955 3.7e-08 62.0 121 38.8
Dinv35704 Davidia involucrata HOM05D001959 ORTHO05D001955 6.4e-08 61.2 130 34.6
Eucgr.B02454 Eucalyptus grandis HOM05D001959 ORTHO05D001955 6.4e-08 61.2 128 35.9
CiPaw.13G104800 Carya illinoinensis HOM05D001959 ORTHO05D001955 8.3e-08 60.8 131 38.2
Glyma.13G329600 Glycine max HOM05D001959 ORTHO05D001955 1.1e-07 60.5 128 37.5
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-07 60.5 71 50.7
Oeu058500.1 Olea europaea HOM05D001959 ORTHO05D001955 1.4e-07 60.1 127 37.8
Oeu058503.1 Olea europaea HOM05D001959 ORTHO05D001955 1.4e-07 60.1 127 37.8
C04p22770 Brassica napus HOM05D001959 ORTHO05D001955 1.9e-07 59.7 139 35.3
PGR102G3367 Punica granatum HOM05D001959 ORTHO05D001955 1.9e-07 59.7 132 36.4
Rhsim01G0221800 Rhododendron simsii HOM05D001959 ORTHO05D001955 2.4e-07 59.3 130 37.7
CAN.G84.35 Capsicum annuum HOM05D001959 ORTHO05D001955 3.2e-07 58.9 129 36.4
DCAR_015568 Daucus carota HOM05D001959 ORTHO05D001955 3.2e-07 58.9 137 31.4
BcaB02g10169 Brassica carinata HOM05D001959 ORTHO05D001955 4.1e-07 58.5 119 37.8
BolC4t23775H Brassica oleracea HOM05D001959 ORTHO05D001955 4.1e-07 58.5 74 43.2
Gorai.004G002000 Gossypium raimondii HOM05D001959 ORTHO05D001955 4.1e-07 58.5 85 47.1
Sc15g0007260 Simmondsia chinensis HOM05D001959 ORTHO05D001955 5.4e-07 58.2 79 43.0
Duzib150G1164 Durio zibethinus HOM05D001959 ORTHO05D001955 7.1e-07 57.8 131 36.6
Oeu047709.3 Olea europaea HOM05D001959 ORTHO05D001955 7.1e-07 57.8 128 37.5
vmacro14484 Vaccinium macrocarpon HOM05D001959 ORTHO05D001955 7.1e-07 57.8 130 36.9
BraA04t17728Z Brassica rapa HOM05D001959 ORTHO05D001955 9.2e-07 57.4 118 35.6
Carub.0004s0951 Capsella rubella HOM05D001959 ORTHO05D001955 1.2e-06 57.0 121 36.4
Haze_20663 Corylus avellana HOM05D001959 ORTHO05D001955 1.6e-06 56.6 130 30.8
BcaC02g10972 Brassica carinata HOM05D001959 ORTHO05D001955 2.1e-06 56.2 74 41.9
HanXRQChr08g0229981 Helianthus annuus HOM05D001959 ORTHO05D001955 2.1e-06 56.2 133 33.8
Solyc11g072590.3 Solanum lycopersicum HOM05D001959 ORTHO05D001955 3.5e-06 55.5 132 37.9
Sopen11g030240 Solanum pennellii HOM05D001959 ORTHO05D001955 3.5e-06 55.5 132 37.9
Thhalv10016186m.g Eutrema salsugineum HOM05D001959 ORTHO05D001955 4.6e-06 55.1 124 36.3
AL4G23040 Arabidopsis lyrata HOM05D001959 ORTHO05D001955 6.0e-06 54.7 126 34.1


User provided reference genes

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