Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 1.9e-179 632.5 336 100.0
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 4.3e-160 568.2 337 90.5
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 4.8e-159 564.7 338 89.1
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 1.9e-155 552.7 335 89.0
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 4.3e-152 541.6 339 85.5
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 8.2e-151 537.3 336 86.9
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.2e-149 533.5 341 85.0
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.5e-149 533.1 339 84.7
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.2e-147 525.4 339 83.5
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 1.6e-146 523.1 341 83.6
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 1.9e-139 499.6 341 79.5
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 8.0e-114 414.5 346 65.0
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.6e-106 390.2 347 61.4
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 4.0e-105 385.6 346 60.1
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 4.9e-103 378.6 345 59.7
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 1.8e-102 376.7 296 66.9
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 4.1e-102 375.6 334 62.9
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 2.0e-101 373.2 352 58.8
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 4.5e-101 372.1 358 58.1
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 1.3e-100 370.5 344 58.1
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 2.9e-100 369.4 323 62.5
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 3.9e-100 369.0 343 60.1
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.2e-98 364.0 311 62.4
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 4.7e-98 362.1 340 58.2
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 8.0e-98 361.3 339 58.7
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 8.0e-98 361.3 339 58.1
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 6.8e-97 358.2 347 59.1
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 6.8e-97 358.2 346 57.5
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 8.9e-97 357.8 340 58.5
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.5e-96 357.1 346 56.6
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 2.0e-96 356.7 335 57.6
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 4.4e-96 355.5 341 58.1
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 5.8e-96 355.1 292 63.0
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 9.8e-96 354.4 346 57.8
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 4.9e-95 352.1 334 58.1
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.4e-94 349.7 340 56.8
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 5.4e-94 348.6 349 55.9
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 7.0e-94 348.2 341 57.2
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 7.0e-94 348.2 347 55.6
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.2e-93 347.4 341 55.1
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.0e-93 346.7 339 57.2
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.7e-92 343.6 348 57.5
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 2.3e-92 343.2 345 55.9
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 6.6e-92 341.7 340 55.6
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 1.5e-91 340.5 298 60.4
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 2.5e-91 339.7 321 57.0
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 3.3e-91 339.3 342 55.0
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 4.3e-91 339.0 341 54.0
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 4.3e-91 339.0 342 55.6
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 9.5e-91 337.8 333 55.0
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 2.1e-90 336.7 292 61.3
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 2.8e-90 336.3 349 56.2
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.8e-90 336.3 341 53.7
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 3.6e-90 335.9 337 54.3
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.6e-90 335.9 337 54.3
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 8.0e-90 334.7 322 55.6
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 3.1e-89 332.8 339 54.6
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 3.1e-89 332.8 312 58.0
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 8.9e-89 331.3 341 54.3
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.0e-88 330.1 348 54.0
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 4.4e-88 328.9 339 53.4
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 5.8e-88 328.6 345 54.5
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 1.3e-87 327.4 324 58.6
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 2.2e-87 326.6 313 58.1
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 3.7e-87 325.9 341 54.0
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 4.1e-86 322.4 354 50.8
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 3.5e-85 319.3 321 53.6
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 7.8e-85 318.2 390 47.9
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 1.0e-84 317.8 290 59.7
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.0e-84 317.8 341 52.8
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 3.3e-83 312.8 332 50.6
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 1.2e-82 310.8 320 54.1
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 4.7e-82 308.9 298 56.4
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 1.8e-81 307.0 292 55.8
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 2.3e-81 306.6 388 47.7
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 6.8e-81 305.1 341 51.3
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 6.8e-81 305.1 332 50.3
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 2.6e-80 303.1 335 51.0
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 2.9e-79 299.7 318 53.5
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 8.3e-79 298.1 320 56.6
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 5.4e-78 295.4 346 50.6
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.7e-76 290.4 337 47.2
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 9.5e-75 284.6 296 55.7
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 4.0e-73 279.3 325 47.7
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 2.2e-71 273.5 340 47.4
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 1.5e-67 260.8 287 47.0
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 1.4e-62 244.2 344 43.6
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 2.3e-60 236.9 307 45.3
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 3.9e-60 236.1 338 45.9
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 3.2e-54 216.5 282 47.2
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 4.6e-53 212.6 247 44.9
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 5.1e-52 209.1 295 42.0
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 6.2e-50 202.2 222 50.9
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 4.5e-48 196.1 204 52.0
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 9.7e-35 151.8 118 68.6
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.8e-34 150.2 136 62.5
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 4.5e-32 142.9 95 70.5
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 7.2e-30 135.6 299 29.8
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 3.0e-28 130.2 256 37.1
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 1.5e-24 117.9 116 55.2
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 4.5e-24 116.3 129 55.8
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 2.5e-22 110.5 292 29.5
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 9.4e-22 108.6 167 43.7
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-17 92.4 305 24.6
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 1.1e-09 68.6 135 36.3
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.0e-08 64.3 63 50.8


User provided reference genes

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