Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 4.3e-122 441.4 237 100.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 7.4e-114 414.1 237 92.8
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.4e-112 409.8 237 92.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 2.6e-111 405.6 237 91.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 4.5e-111 404.8 237 90.7
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 2.7e-108 395.6 237 89.9
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.8e-99 366.3 237 83.5
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.8e-99 366.3 237 83.5
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.5e-98 363.2 237 83.1
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.5e-98 363.2 237 83.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.2e-93 345.1 242 79.3
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.6e-92 343.2 210 86.7
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.6e-92 341.7 242 78.1
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.3e-91 339.3 246 76.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 5.9e-87 324.7 207 82.1
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.3e-83 312.8 242 69.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 8.8e-83 310.8 243 70.4
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.8e-81 305.8 232 71.6
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 2.8e-81 305.8 241 69.7
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.8e-81 305.1 239 69.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 9.1e-80 300.8 244 68.4
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.2e-79 300.4 242 68.2
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.5e-79 298.9 233 67.4
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 7.7e-79 297.7 244 67.6
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 7.7e-79 297.7 244 66.4
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.0e-78 297.4 244 67.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.7e-78 296.6 245 66.9
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.2e-78 296.2 245 67.3
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.9e-78 295.8 204 77.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 5.0e-78 295.0 241 67.6
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 8.5e-78 294.3 205 77.1
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.5e-78 294.3 245 66.1
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.1e-77 293.9 241 67.6
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.5e-77 293.5 239 68.2
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.5e-77 293.5 245 66.9
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.5e-77 292.7 239 68.2
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.2e-77 292.4 205 75.6
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 4.2e-77 292.0 205 75.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 4.2e-77 292.0 207 73.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.2e-77 292.0 208 72.6
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.5e-77 291.6 211 72.0
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.6e-76 290.0 212 73.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.7e-76 289.3 244 66.4
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.7e-76 289.3 248 64.1
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 3.6e-76 288.9 230 67.8
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.6e-76 288.9 245 65.3
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 4.7e-76 288.5 204 75.5
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.1e-76 288.1 207 74.4
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 6.1e-76 288.1 207 72.5
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 8.0e-76 287.7 245 65.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.0e-75 287.3 204 74.5
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.0e-75 287.3 205 74.1
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.4e-75 287.0 208 73.6
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.4e-75 287.0 205 73.7
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.4e-75 287.0 208 72.6
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.4e-75 287.0 208 72.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.4e-75 287.0 244 66.0
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.8e-75 286.6 242 65.3
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 2.3e-75 286.2 207 74.4
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.3e-75 286.2 240 65.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 5.2e-75 285.0 205 73.7
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 5.2e-75 285.0 204 73.5
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 5.2e-75 285.0 236 66.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.0e-74 283.1 237 67.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 4.4e-74 282.0 244 63.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 4.4e-74 282.0 229 64.6
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 5.7e-74 281.6 208 70.7
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 5.7e-74 281.6 206 73.8
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 7.4e-74 281.2 244 63.9
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 7.4e-74 281.2 208 72.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.3e-73 280.4 237 66.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.3e-73 280.4 237 66.2
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.3e-73 280.4 206 71.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.7e-73 280.0 205 72.2
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 1.7e-73 280.0 198 74.2
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.2e-73 279.6 237 66.7
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.2e-73 279.6 242 64.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.2e-73 279.6 207 72.0
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.8e-73 279.3 183 80.9
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.8e-73 278.5 242 64.5
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.8e-73 278.5 225 68.0
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 4.8e-73 278.5 206 72.8
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.8e-73 278.5 245 64.5
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.3e-73 278.1 188 77.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 8.2e-73 277.7 241 63.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-72 277.3 237 66.2
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.4e-72 276.9 207 71.0
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.1e-72 275.8 213 69.5
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 4.1e-72 275.4 245 63.3
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 5.3e-72 275.0 210 71.4
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 5.3e-72 275.0 208 70.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 5.3e-72 275.0 244 63.5
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 7.0e-72 274.6 198 73.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.0e-72 274.6 245 62.9
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 9.1e-72 274.2 208 69.7
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 1.2e-71 273.9 207 70.0
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.2e-71 273.9 226 67.3
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.6e-71 273.5 242 64.0
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.6e-71 273.5 207 70.0
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.6e-71 272.7 205 70.2
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 7.7e-71 271.2 200 71.5
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.0e-70 270.8 210 69.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.3e-70 270.4 197 72.6
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.7e-70 270.0 209 69.4
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 3.8e-70 268.9 207 68.6
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 3.8e-70 268.9 207 68.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 5.0e-70 268.5 207 68.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 6.5e-70 268.1 208 70.2
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.1e-69 267.3 210 67.6
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.5e-69 266.9 205 71.2
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 7.2e-69 264.6 207 67.6
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.2e-68 263.8 224 63.4
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 2.1e-68 263.1 244 60.2
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 2.7e-68 262.7 201 70.1
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 3.6e-68 262.3 201 69.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.3e-67 259.6 213 68.1
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.0e-67 259.2 230 62.2
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 6.8e-67 258.1 213 66.7
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.7e-65 252.3 206 67.5
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 5.3e-64 248.4 220 60.9
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 7.0e-64 248.1 207 63.3
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.6e-63 246.9 159 83.6
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 3.8e-62 242.3 198 64.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 2.7e-60 236.1 198 63.1
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 6.8e-59 231.5 175 69.1
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 9.8e-58 227.6 222 55.0
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.7e-49 199.1 218 55.5
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 4.1e-48 195.7 189 57.7
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 2.7e-47 193.0 165 66.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.0e-46 191.0 231 50.6
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-40 171.0 135 68.9
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.1e-36 156.8 113 69.9
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.6e-34 149.8 176 47.2
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 5.4e-32 142.1 218 45.4
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 1.6e-31 140.6 173 45.1
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 6.6e-30 135.2 104 66.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 9.9e-26 121.3 188 38.8
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.3e-25 120.9 115 54.8
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.6e-23 114.0 86 65.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 6.4e-17 92.0 90 62.2
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.2e-16 89.7 195 32.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.7e-15 86.7 76 61.8
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 8.1e-12 75.1 207 28.5
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.7e-09 67.4 58 65.5
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.7e-06 57.4 57 57.9


User provided reference genes

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