Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR065710 Cardamine hirsuta HOM05D002658 ORTHO05D021408 9.6e-98 360.1 181 100.0
AL2G32480 Arabidopsis lyrata HOM05D002658 ORTHO05D021408 2.0e-39 166.4 218 48.6
CARHR065730 Cardamine hirsuta HOM05D002658 ORTHO05D021408 2.0e-39 166.4 197 50.3
AT1G72800 Arabidopsis thaliana HOM05D002658 ORTHO05D021408 2.8e-36 156.0 107 72.9
Carub.0002s1964 Capsella rubella HOM05D002658 ORTHO05D021408 1.9e-32 143.3 228 44.3
AL2G32490 Arabidopsis lyrata HOM05D005175 ORTHO05D021408 2.6e-18 96.3 183 41.0
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 9.2e-16 87.8 99 51.5
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 1.2e-15 87.4 110 48.2
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.2e-15 87.4 109 49.5
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 3.5e-15 85.9 107 48.6
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 1.3e-14 84.0 127 40.9
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 8.6e-14 81.3 114 44.7
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 8.6e-14 81.3 114 44.7
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 8.6e-14 81.3 114 44.7
BcaC07g37093 Brassica carinata HOM05D002658 ORTHO05D003000 1.5e-13 80.5 69 62.3
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 1.9e-13 80.1 88 53.4
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 2.5e-13 79.7 112 45.5
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 3.3e-13 79.3 103 44.7
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 3.3e-13 79.3 103 44.7
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 3.3e-13 79.3 88 53.4
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 1.2e-12 77.4 91 49.5
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 2.1e-12 76.6 103 43.7
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 2.8e-12 76.3 103 43.7
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 2.8e-12 76.3 103 43.7
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 2.8e-12 76.3 103 43.7
AL8G34510 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 4.7e-12 75.5 108 44.4
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 6.2e-12 75.1 108 43.5
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 6.2e-12 75.1 103 42.7
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 6.2e-12 75.1 103 42.7
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 3.1e-11 72.8 97 47.4
TPR.G32352 Trifolium pratense HOM05D002658 ORTHO05D003000 5.2e-11 72.0 110 42.7
BNapus_Darmor_BZH_scaffold_38p00490 Brassica napus HOM05D008043 ORTHO05D010395 8.9e-11 71.2 94 46.8
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.2e-10 70.9 94 43.6
Phvul.011G030600 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 1.2e-10 70.9 93 47.3
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 1.5e-10 70.5 108 43.5
Lalb_Chr19g0139381 Lupinus albus HOM05D002658 ORTHO05D003000 2.6e-10 69.7 94 44.7
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 3.4e-10 69.3 94 45.7
Thhalv10014402m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 3.4e-10 69.3 67 50.7
BolC2t07184H Brassica oleracea HOM05D008043 ORTHO05D010395 4.4e-10 68.9 96 43.8
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 7.6e-10 68.2 107 43.0
Duzib132G0973 Durio zibethinus HOM05D002658 ORTHO05D003000 9.9e-10 67.8 118 40.7
AL132U10010 Arabidopsis lyrata HOM05D008043 ORTHO05D031374 1.3e-09 67.4 143 33.6
BraA02t05677Z Brassica rapa HOM05D008043 ORTHO05D010395 1.3e-09 67.4 96 42.7
RcHm_v2.0_Chr4g0446621 Rosa chinensis HOM05D002658 ORTHO05D003000 1.3e-09 67.4 115 40.9
Lalb_Chr01g0001461 Lupinus albus HOM05D002658 ORTHO05D003000 1.7e-09 67.0 101 44.6
Os08g0192900 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 1.7e-09 67.0 103 46.6
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 2.2e-09 66.6 109 42.2
BcaB02g09171 Brassica carinata HOM05D008043 ORTHO05D010395 2.9e-09 66.2 79 46.8
Carub.0006s2942 Capsella rubella HOM05D008043 ORTHO05D010395 2.9e-09 66.2 94 41.5
FAN17G0854 Fragaria x ananassa HOM05D002658 ORTHO05D003000 2.9e-09 66.2 98 42.9
Gohir.D13G061900 Gossypium hirsutum HOM05D002658 ORTHO05D003000 2.9e-09 66.2 107 42.1
Gorai.013G070400 Gossypium raimondii HOM05D002658 ORTHO05D003000 2.9e-09 66.2 116 40.5
TWI53G1249 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 2.9e-09 66.2 114 38.6
BcaC03g13905 Brassica carinata HOM05D001688 ORTHO05D010395 3.8e-09 65.9 93 45.2
C02p11120 Brassica napus HOM05D008043 ORTHO05D010395 3.8e-09 65.9 93 45.2
CiPaw.06G060000 Carya illinoinensis HOM05D002658 ORTHO05D003000 3.8e-09 65.9 107 43.9
Eucgr.G02571 Eucalyptus grandis HOM05D002658 ORTHO05D003000 3.8e-09 65.9 93 40.9
Glyma.12G027400 Glycine max HOM05D002658 ORTHO05D003000 3.8e-09 65.9 93 44.1
Hund08548 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.8e-09 65.9 104 40.4
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 3.8e-09 65.9 104 39.4
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 4.9e-09 65.5 129 36.4
Carub.0006s2724 Capsella rubella HOM05D002658 ORTHO05D010395 4.9e-09 65.5 136 41.2
Potri.005G093100 Populus trichocarpa HOM05D002658 ORTHO05D003000 4.9e-09 65.5 120 36.7
CDE05G1740 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 6.4e-09 65.1 100 43.0
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 6.4e-09 65.1 92 41.3
Manes.04G057000 Manihot esculenta HOM05D002658 ORTHO05D003000 6.4e-09 65.1 112 40.2
Carub.0008s1892 Capsella rubella HOM05D008043 ORTHO05D010395 8.4e-09 64.7 132 34.8
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 8.4e-09 64.7 97 44.3
BcaC02g11979 Brassica carinata HOM05D008043 ORTHO05D010395 1.1e-08 64.3 87 42.5
BcaC02g11981 Brassica carinata HOM05D008043 ORTHO05D010395 1.1e-08 64.3 88 44.3
C04p09330 Brassica napus HOM05D008043 ORTHO05D010395 1.1e-08 64.3 75 49.3
BraA05t19738Z Brassica rapa HOM05D008043 ORTHO05D010395 1.1e-08 64.3 82 47.6
CDE12G0003 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.1e-08 64.3 97 44.3
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 1.1e-08 64.3 77 50.6
FAN07G0595 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.1e-08 64.3 88 44.3
FAN12G1156 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.1e-08 64.3 105 41.9
Gohir.A13G060000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.1e-08 64.3 107 41.1
TAR629G2145 Trochodendron aralioides HOM05D002658 ORTHO05D003000 1.1e-08 64.3 100 44.0
TAR629G3397 Trochodendron aralioides HOM05D002658 ORTHO05D003000 1.1e-08 64.3 100 44.0
Thhalv10026891m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 1.4e-08 63.9 103 37.9
Glyma.11G101500 Glycine max HOM05D002658 ORTHO05D003000 1.4e-08 63.9 113 41.6
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 1.4e-08 63.9 104 42.3
Sabra05G0077200 Salix brachista HOM05D002658 ORTHO05D003000 1.4e-08 63.9 103 39.8
C04p09280 Brassica napus HOM05D008043 ORTHO05D010395 1.9e-08 63.5 88 43.2
Thecc.02G160500 Theobroma cacao HOM05D002658 ORTHO05D003000 1.9e-08 63.5 113 39.8
ATR1098G121 Amborella trichopoda HOM05D002658 ORTHO05D003000 2.4e-08 63.2 118 39.0
BcaC02g11993 Brassica carinata HOM05D008043 ORTHO05D010395 2.4e-08 63.2 81 44.4
BolC4t22503H Brassica oleracea HOM05D008043 ORTHO05D010395 2.4e-08 63.2 81 44.4
BolC4t22514H Brassica oleracea HOM05D008043 ORTHO05D010395 2.4e-08 63.2 81 44.4
ClCG10G011940 Citrullus lanatus HOM05D002658 ORTHO05D003000 2.4e-08 63.2 101 43.6
Haze_11751 Corylus avellana HOM05D002658 ORTHO05D003000 2.4e-08 63.2 94 45.7
VMungo1127G1795 Vigna mungo HOM05D002658 ORTHO05D003000 2.4e-08 63.2 96 43.8
BcaC02g11982 Brassica carinata HOM05D008043 ORTHO05D010395 3.2e-08 62.8 81 44.4
C04p09090 Brassica napus HOM05D008043 ORTHO05D010395 3.2e-08 62.8 81 44.4
C04p09250 Brassica napus HOM05D008043 ORTHO05D010395 3.2e-08 62.8 81 44.4
BolC4t22502H Brassica oleracea HOM05D008043 ORTHO05D010395 3.2e-08 62.8 81 44.4
BolC4t22531H Brassica oleracea HOM05D008043 ORTHO05D010395 3.2e-08 62.8 81 44.4
BolC4t22534H Brassica oleracea HOM05D008043 ORTHO05D010395 3.2e-08 62.8 81 44.4
MELO3C024024.2 Cucumis melo HOM05D002658 ORTHO05D003000 3.2e-08 62.8 115 39.1
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 3.2e-08 62.8 98 41.8
Sed0002082 Sechium edule HOM05D002658 ORTHO05D003000 3.2e-08 62.8 127 36.2
Thhalv10015284m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 4.2e-08 62.4 126 36.5
FvH4_4g36861 Fragaria vesca HOM05D002658 ORTHO05D003000 4.2e-08 62.4 88 43.2
Lalb_Chr03g0024791 Lupinus albus HOM05D002658 ORTHO05D003000 4.2e-08 62.4 92 44.6
Manes.04G053300 Manihot esculenta HOM05D002658 ORTHO05D003000 4.2e-08 62.4 99 42.4
Sed0005223 Sechium edule HOM05D002658 ORTHO05D003000 4.2e-08 62.4 98 43.9
A05p07710 Brassica napus HOM05D008043 ORTHO05D010395 5.4e-08 62.0 81 44.4
GSVIVG01012042001 Vitis vinifera HOM05D002658 ORTHO05D003000 5.4e-08 62.0 94 42.6
Zm00001eb171320 Zea mays HOM05D002658 ORTHO05D003000 5.4e-08 62.0 90 38.9
CsaV3_3G031420 Cucumis sativus L. HOM05D002658 ORTHO05D003000 7.1e-08 61.6 101 41.6
BcaNung06005 Brassica carinata HOM05D008043 ORTHO05D010395 9.3e-08 61.2 142 31.0
CARHR093990 Cardamine hirsuta HOM05D002658 ORTHO05D003000 9.3e-08 61.2 110 31.8
CDE02G0625 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 9.3e-08 61.2 96 42.7
Thhalv10027509m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 9.3e-08 61.2 72 47.2
Psat7g173280 Pisum sativum HOM05D002658 ORTHO05D003000 9.3e-08 61.2 97 40.2
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 1.2e-07 60.8 99 40.4
Lj3g0010214 Lotus japonicus HOM05D002658 ORTHO05D003000 1.2e-07 60.8 105 41.9
AL3G31920 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 1.6e-07 60.5 89 40.4
Cpa.g.sc183.5 Carica papaya HOM05D002658 ORTHO05D003000 1.6e-07 60.5 95 44.2
Hma1.2p1_1683F.1_g297380 Hydrangea macrophylla HOM05D002658 ORTHO05D003000 1.6e-07 60.5 169 35.5
Lj1g0013048 Lotus japonicus HOM05D002658 ORTHO05D003000 1.6e-07 60.5 97 40.2
Atru.chr11.1170 Acer truncatum HOM05D002658 ORTHO05D003000 2.1e-07 60.1 87 46.0
CDE01G0413 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 2.1e-07 60.1 97 41.2
Carub.0005s0862 Capsella rubella HOM05D008043 ORTHO05D031374 2.7e-07 59.7 161 28.6
Medtr4g074930 Medicago truncatula HOM05D002658 ORTHO05D003000 4.6e-07 58.9 110 40.9
AL8G33140 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 6.0e-07 58.5 103 40.8
BcaC05g27059 Brassica carinata HOM05D008043 ORTHO05D010395 6.0e-07 58.5 98 39.8
C05p29170 Brassica napus HOM05D008043 ORTHO05D010395 6.0e-07 58.5 98 39.8
Gohir.D12G137566 Gossypium hirsutum HOM05D002658 ORTHO05D003000 6.0e-07 58.5 61 49.2
Gorai.008G149100 Gossypium raimondii HOM05D002658 ORTHO05D003000 6.0e-07 58.5 61 49.2
MBI02_g07021_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 6.0e-07 58.5 98 42.9
BolC8t47262H Brassica oleracea HOM05D002658 ORTHO05D003000 7.8e-07 58.2 55 58.2
BraA09t39144Z Brassica rapa HOM05D008043 ORTHO05D010395 7.8e-07 58.2 98 39.8
Carub.0008s1890 Capsella rubella HOM05D008043 ORTHO05D010395 7.8e-07 58.2 81 44.4
Ca_19028_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 7.8e-07 58.2 104 40.4
SGA_v2.0_scaffold88G27231 Striga asiatica HOM05D002658 ORTHO05D003000 7.8e-07 58.2 123 36.6
A09p36190 Brassica napus HOM05D008043 ORTHO05D010395 1.0e-06 57.8 98 39.8
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 1.0e-06 57.8 95 43.2
Ciclev10030875m.g Citrus clementina HOM05D002658 ORTHO05D003000 1.0e-06 57.8 95 41.1
Nn3g18649 Nelumbo nucifera HOM05D002658 ORTHO05D003000 1.0e-06 57.8 98 43.9
arahy.Tifrunner.gnm1.ann1.L3BXHZ Arachis hypogaea HOM05D002658 ORTHO05D003000 1.3e-06 57.4 122 33.6
Thhalv10015531m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 1.3e-06 57.4 90 38.9
FvH4_5g39267 Fragaria vesca HOM05D002658 ORTHO05D003000 1.3e-06 57.4 94 42.6
Gohir.A01G012800 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.3e-06 57.4 83 41.0
Gohir.D01G014000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.3e-06 57.4 83 41.0
Gorai.002G015800 Gossypium raimondii HOM05D002658 ORTHO05D003000 1.3e-06 57.4 83 41.0
Sc06g0007980 Simmondsia chinensis HOM05D002658 ORTHO05D003000 1.3e-06 57.4 114 36.8
HPP92_026528 Vanilla planifolia HOM05D002658 ORTHO05D003000 1.3e-06 57.4 99 38.4
HPP92_026555 Vanilla planifolia HOM05D002658 ORTHO05D003000 1.3e-06 57.4 99 38.4
BcaB05g22710 Brassica carinata HOM05D008043 ORTHO05D010395 1.7e-06 57.0 108 34.3
Carub.0006s3662 Capsella rubella HOM05D008043 ORTHO05D031374 1.7e-06 57.0 161 28.0
MD16G1001600 Malus domestica HOM05D002658 ORTHO05D003000 1.7e-06 57.0 153 33.3
CANSAT56G3384 Cannabis sativa HOM05D002658 ORTHO05D003000 2.3e-06 56.6 106 36.8
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 2.3e-06 56.6 99 38.4
SalBow2G3648 Salvia bowleyana HOM05D002658 ORTHO05D003000 2.3e-06 56.6 135 37.0
TWI74G1649 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 2.3e-06 56.6 88 37.5
MSTRG.432 Avicennia marina HOM05D002658 ORTHO05D003000 3.0e-06 56.2 101 39.6
BcaC01g00257 Brassica carinata HOM05D008043 ORTHO05D010395 3.0e-06 56.2 167 29.9
C03p77350 Brassica napus HOM05D008043 ORTHO05D010395 3.0e-06 56.2 167 29.9
Lsat_1_v5_gn_3_35601 Lactuca sativa HOM05D002658 ORTHO05D003000 3.0e-06 56.2 94 38.3
Lsat_1_v5_gn_4_65420 Lactuca sativa HOM05D002658 ORTHO05D003000 3.0e-06 56.2 89 36.0
MD13G1006400 Malus domestica HOM05D002658 ORTHO05D003000 3.0e-06 56.2 100 41.0
EL10Ac9g22941 Beta vulgaris HOM05D002658 ORTHO05D003000 3.9e-06 55.8 109 33.9
BolC3t19988H Brassica oleracea HOM05D008043 ORTHO05D010395 3.9e-06 55.8 167 29.9
PSO782G1034 Papaver somniferum HOM05D002658 ORTHO05D003000 3.9e-06 55.8 78 41.0
AL3G20250 Arabidopsis lyrata HOM05D005207 ORTHO05D011102 5.1e-06 55.5 85 40.0
A08p23990 Brassica napus HOM05D008043 ORTHO05D010395 5.1e-06 55.5 173 30.6
BraA08t34356Z Brassica rapa HOM05D008043 ORTHO05D010395 5.1e-06 55.5 173 30.6
FAN08G3096 Fragaria x ananassa HOM05D002658 ORTHO05D003000 5.1e-06 55.5 94 41.5
Glyma.09G281700 Glycine max HOM05D002658 ORTHO05D003000 5.1e-06 55.5 82 40.2
BcaB02g09206 Brassica carinata HOM05D008043 ORTHO05D010395 8.7e-06 54.7 98 36.7
C04p09260 Brassica napus HOM05D008043 ORTHO05D010395 8.7e-06 54.7 54 53.7
Carub.0003s1839 Capsella rubella HOM05D002658 ORTHO05D003000 8.7e-06 54.7 110 32.7
Prupe.1G346800 Prunus persica HOM05D002658 ORTHO05D003000 8.7e-06 54.7 105 37.1
Rhsim09G0074900 Rhododendron simsii HOM05D002658 ORTHO05D003000 8.7e-06 54.7 110 37.3
Sp7g36960 Schrenkiella parvula HOM05D008043 ORTHO05D010395 8.7e-06 54.7 62 48.4
HPP92_014004 Vanilla planifolia HOM05D002658 ORTHO05D003000 8.7e-06 54.7 84 41.7


User provided reference genes

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