Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR061110 Cardamine hirsuta HOM05D002263 ORTHO05D012916 9.7e-85 317.4 244 100.0
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.4e-43 178.7 252 68.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 4.2e-40 169.1 288 54.2
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 3.7e-36 156.0 250 59.6
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 7.3e-32 141.7 245 64.1
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 7.3e-32 141.7 245 64.1
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 6.1e-31 138.7 245 60.8
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.8e-30 137.1 245 62.4
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 2.3e-30 136.7 247 57.9
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 5.2e-30 135.6 245 60.4
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 2.6e-29 133.3 219 60.7
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.1e-27 127.9 243 42.0
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 3.3e-24 116.3 280 42.1
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.3e-17 94.4 90 68.9
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 8.9e-14 81.6 278 33.5
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 8.9e-14 81.6 274 31.8
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.2e-13 81.3 245 35.1
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 2.6e-13 80.1 291 37.8
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 7.5e-13 78.6 90 52.2
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 9.9e-13 78.2 96 52.1
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 2.2e-12 77.0 274 48.5
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 2.2e-12 77.0 103 51.5
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 2.2e-12 77.0 96 51.0
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.9e-12 75.9 94 52.1
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 8.3e-12 75.1 92 50.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 1.1e-11 74.7 94 51.1
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.4e-11 74.3 92 48.9
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.4e-11 74.3 92 48.9
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 1.9e-11 73.9 89 51.7
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 1.9e-11 73.9 296 29.7
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.9e-11 73.9 222 32.0
Hma1.2p1_2160F.1_g315590 Hydrangea macrophylla HOM05D002263 ORTHO05D012916 3.2e-11 73.2 96 51.0
A03p58560 Brassica napus HOM05D002263 ORTHO05D013693 4.1e-11 72.8 92 54.3
BraA03t14916Z Brassica rapa HOM05D002263 ORTHO05D013693 4.1e-11 72.8 92 54.3
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 4.1e-11 72.8 98 51.0
Nn7g36257 Nelumbo nucifera HOM05D002263 ORTHO05D003537 5.4e-11 72.4 97 49.5
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 7.1e-11 72.0 301 34.2
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 7.1e-11 72.0 94 45.7
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 7.1e-11 72.0 93 50.5
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 9.2e-11 71.6 312 39.4
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.6e-10 70.9 102 45.1
Cpa.g.sc125.26 Carica papaya HOM05D002263 ORTHO05D003537 2.1e-10 70.5 284 32.0
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 2.1e-10 70.5 90 51.1
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 2.1e-10 70.5 87 50.6
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.1e-10 70.5 286 28.7
A03p58620 Brassica napus HOM05D002263 ORTHO05D013693 4.6e-10 69.3 93 53.8
BraA03t14922Z Brassica rapa HOM05D002263 ORTHO05D013693 4.6e-10 69.3 93 53.8
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 4.6e-10 69.3 296 32.8
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 6.0e-10 68.9 100 44.0
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 6.0e-10 68.9 98 45.9
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 6.0e-10 68.9 293 35.2
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 6.0e-10 68.9 92 47.8
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 7.8e-10 68.6 80 60.0
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.3e-09 67.8 101 47.5
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 1.3e-09 67.8 80 60.0
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.7e-09 67.4 301 36.9
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.0e-09 66.6 108 45.4
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.0e-09 66.6 93 48.4
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 3.9e-09 66.2 91 47.3
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 3.9e-09 66.2 92 46.7
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 3.9e-09 66.2 105 49.5
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 6.6e-09 65.5 94 45.7
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 6.6e-09 65.5 290 28.6
Sabra09G0043300 Salix brachista HOM05D002263 ORTHO05D003537 6.6e-09 65.5 297 29.3
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 1.5e-08 64.3 117 47.9
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.5e-08 64.3 84 42.9
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 4.3e-08 62.8 298 37.2
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 4.3e-08 62.8 248 38.3
Sed0015505 Sechium edule HOM05D002263 ORTHO05D012916 5.6e-08 62.4 102 41.2
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 7.3e-08 62.0 100 44.0
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 9.5e-08 61.6 250 41.2
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 9.5e-08 61.6 91 50.5
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 1.2e-07 61.2 99 45.5
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.2e-07 61.2 293 33.1
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.6e-07 60.8 253 31.2
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.6e-07 60.8 94 46.8
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.6e-07 60.8 297 43.4
MBI02_g23142_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D012916 2.1e-07 60.5 85 44.7
BcaNung00439 Brassica carinata HOM05D002263 ORTHO05D013693 2.8e-07 60.1 70 51.4
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.8e-07 60.1 306 30.4
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.8e-07 60.1 88 45.5
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 2.8e-07 60.1 290 32.1
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.1e-06 58.2 97 53.6
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 1.4e-06 57.8 107 49.5
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.4e-06 57.8 100 41.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.8e-06 57.4 304 35.5
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.8e-06 57.4 240 29.6
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 2.4e-06 57.0 289 28.0
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 3.1e-06 56.6 108 40.7
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 4.0e-06 56.2 260 31.9
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 5.2e-06 55.8 307 25.7
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 8.9e-06 55.1 295 32.2
QL08p037214 Quercus lobata HOM05D002263 ORTHO05D005465 8.9e-06 55.1 72 48.6
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 8.9e-06 55.1 296 29.4


User provided reference genes

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