Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 0.0e+00 1168.7 606 100.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.7e-298 1027.3 608 89.6
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 8.0e-290 1000.0 607 87.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 3.1e-289 998.0 610 87.9
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 4.3e-283 977.6 611 85.9
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.3e-268 928.7 643 78.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.1e-265 918.3 610 80.7
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 5.8e-264 914.1 609 80.8
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.3e-263 912.9 609 80.6
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.7e-263 912.5 609 80.5
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.2e-263 912.1 607 80.4
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 2.0e-256 889.0 555 85.9
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 7.6e-256 887.1 617 78.1
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.8e-220 769.6 621 68.0
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.9e-215 752.3 620 66.8
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.2e-214 748.4 618 65.7
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.2e-213 746.9 621 66.2
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 5.7e-211 738.0 621 65.2
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 9.7e-211 737.3 606 66.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 2.8e-210 735.7 622 64.8
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.7e-210 735.3 622 64.8
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.0e-209 731.1 623 65.2
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 9.1e-209 730.7 634 63.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 5.9e-208 728.0 622 65.1
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 7.7e-208 727.6 632 63.3
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.8e-207 725.3 621 65.7
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-206 723.8 622 63.3
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.9e-206 723.0 626 65.0
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.2e-206 722.2 617 64.0
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 9.4e-206 720.7 617 64.3
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 3.6e-205 718.8 619 64.0
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 4.7e-205 718.4 627 63.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 6.1e-205 718.0 629 63.8
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.8e-204 716.5 631 62.9
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.0e-204 715.3 635 63.9
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 8.8e-204 714.1 622 64.6
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.3e-202 710.3 642 62.6
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.8e-202 708.4 629 62.6
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-200 703.7 628 63.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 7.7e-200 701.0 618 62.6
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.0e-199 700.7 606 63.2
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.9e-198 696.4 617 63.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.2e-197 693.7 619 62.7
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.2e-197 693.7 658 59.0
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.7e-197 692.6 625 63.4
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 4.7e-197 691.8 624 61.5
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.4e-196 690.3 625 61.9
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-196 689.9 658 60.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 5.2e-196 688.3 632 60.9
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 2.0e-195 686.4 618 63.3
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 7.5e-195 684.5 621 61.2
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 9.8e-195 684.1 610 61.8
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.7e-194 683.3 619 61.2
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.8e-194 682.6 624 62.0
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 6.3e-194 681.4 620 62.7
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.8e-193 679.9 616 63.0
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.6e-192 676.8 627 62.5
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.9e-192 674.9 648 60.5
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.3e-191 673.7 626 61.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.7e-191 673.3 623 60.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 8.5e-191 671.0 620 60.3
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 5.5e-190 668.3 623 60.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.7e-189 666.0 629 60.6
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.3e-188 662.9 620 59.7
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 2.3e-188 662.9 619 61.2
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.0e-188 662.5 622 60.5
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 8.8e-188 661.0 601 62.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-187 659.8 622 60.0
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 3.4e-187 659.1 627 59.8
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.4e-187 658.7 622 60.8
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 9.8e-187 657.5 622 61.6
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 4.9e-186 655.2 622 59.0
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 4.9e-186 655.2 619 59.9
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 7.0e-185 651.4 606 61.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.7e-184 647.9 651 56.8
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.3e-183 647.1 635 58.4
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.7e-183 646.7 659 56.8
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 7.2e-182 641.3 609 58.6
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.1e-181 639.8 486 68.9
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.8e-180 636.7 614 61.7
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.0e-180 636.0 636 57.5
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.2e-179 634.0 643 57.2
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 2.0e-179 633.3 644 58.5
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 5.7e-179 631.7 614 58.1
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.1e-177 627.5 568 60.2
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 4.1e-177 625.5 567 62.1
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.9e-175 619.4 636 57.2
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.9e-174 616.7 622 56.9
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 9.5e-174 614.4 560 60.9
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.1e-173 613.2 595 59.2
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.2e-171 607.4 628 56.4
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 2.6e-171 606.3 617 57.7
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 8.3e-170 601.3 619 55.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.2e-168 597.4 613 56.0
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.6e-168 597.0 612 57.0
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.5e-166 587.8 619 55.4
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 8.1e-165 584.7 334 87.4
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 4.0e-164 582.4 616 54.9
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 8.3e-162 574.7 627 55.0
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.0e-159 567.8 588 56.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.3e-159 566.6 533 59.8
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.5e-158 563.1 562 57.8
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 2.9e-146 523.1 531 56.5
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.2e-145 519.6 603 52.9
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 5.4e-145 518.8 564 54.8
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 2.3e-143 513.5 339 75.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.0e-140 501.5 638 50.6
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.8e-139 498.8 400 66.0
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 7.6e-139 498.4 340 75.3
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.8e-133 479.9 521 53.9
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-132 476.9 608 48.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.2e-130 470.3 321 74.5
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.7e-128 463.4 438 58.7
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 2.5e-118 430.3 373 68.1
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 5.0e-114 416.0 519 48.6
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.9e-113 414.1 276 79.7
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 2.3e-111 407.1 648 42.3
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-108 397.5 509 49.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 6.9e-108 395.6 399 57.1
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 5.3e-92 342.8 397 50.1
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.5e-91 339.7 320 59.7
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 8.5e-90 335.5 485 44.5
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 3.6e-88 330.1 268 73.5
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.8e-84 317.8 196 82.7
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 4.7e-80 303.1 694 35.6
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.0e-79 302.0 339 55.8
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.2e-77 294.3 327 53.2
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-77 293.9 365 48.5
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.0e-74 285.4 230 64.3
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 2.3e-71 274.2 224 61.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.0e-59 234.6 272 51.8
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.9e-57 228.0 238 54.2
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.1e-52 212.2 301 42.9
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.6e-51 208.4 647 29.1
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-50 204.5 263 44.5
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.8e-47 194.9 106 89.6
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 8.9e-47 192.6 276 45.7
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 4.4e-46 190.3 128 75.8
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 2.4e-44 184.5 278 46.8
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 5.4e-44 183.3 149 67.8
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.5e-41 175.3 266 44.4
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 4.7e-40 170.2 257 40.9
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.0e-39 167.2 286 44.1
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.0e-39 167.2 110 74.5
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 5.1e-34 150.2 273 40.3
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.3e-33 146.4 75 98.7
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.2e-32 145.6 75 98.7
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.1e-31 142.5 81 90.1
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.6e-30 137.9 234 37.6
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.8e-29 134.0 320 32.5
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.8e-29 134.0 203 40.4
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-28 131.7 180 43.9
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 2.4e-28 131.3 126 58.7
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.5e-25 122.1 324 34.3
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-24 119.0 205 43.9
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.6e-22 111.3 386 27.7
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.3e-21 109.0 254 30.7
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 6.4e-21 106.7 133 42.9
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 8.4e-21 106.3 121 49.6
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 4.2e-20 104.0 152 45.4
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-19 102.1 174 39.7
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.5e-19 100.9 151 47.0
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.6e-17 93.6 133 45.9
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 9.6e-17 92.8 77 59.7
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-16 92.4 150 44.7
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-16 92.0 145 44.8
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.8e-16 91.3 164 43.9
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.9e-12 78.6 107 45.8
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 2.1e-08 65.1 50 62.0
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.1e-07 61.2 38 89.5
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 3.1e-07 61.2 48 56.2
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 9.0e-07 59.7 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 7.6e-06 56.6 73 43.8


User provided reference genes

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