Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR053780 Cardamine hirsuta HOM05D000115 ORTHO05D028524 5.6e-29 130.2 62 100.0
BcaC05g28376 Brassica carinata HOM05D000115 ORTHO05D004431 4.3e-21 104.0 99 59.6
C05p44540 Brassica napus HOM05D002605 ORTHO05D004431 4.3e-21 104.0 99 59.6
BolC5t33178H Brassica oleracea HOM05D000115 ORTHO05D004431 4.3e-21 104.0 99 59.6
Thhalv10012080m.g Eutrema salsugineum HOM05D000115 ORTHO05D004431 4.3e-21 104.0 99 59.6
AL1G58010 Arabidopsis lyrata HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
AL3G33630 Arabidopsis lyrata HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
AT1G50370 Arabidopsis thaliana HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
AT3G19980 Arabidopsis thaliana HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
BcaB06g26067 Brassica carinata HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
A05p29140 Brassica napus HOM05D002605 ORTHO05D004431 9.5e-21 102.8 99 58.6
C03p50830 Brassica napus HOM05D002605 ORTHO05D002842 9.5e-21 102.8 99 58.6
BraA05t21797Z Brassica rapa HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
Carub.0001s3945 Capsella rubella HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
Cc00_g02790 Coffea canephora HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
Gohir.A04G109600 Gossypium hirsutum HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
Gohir.D04G149800 Gossypium hirsutum HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
Gorai.012G136400 Gossypium raimondii HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
Sp3g18000 Schrenkiella parvula HOM05D000115 ORTHO05D004431 9.5e-21 102.8 99 58.6
MSTRG.4315 Avicennia marina HOM05D000115 ORTHO05D004431 1.6e-20 102.1 99 58.6
Atru.chr11.43 Acer truncatum HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
CARHR095510 Cardamine hirsuta HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
Cfa018672 Carpinus fangiana HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
CiPaw.16G001100 Carya illinoinensis HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
AUR62017752 Chenopodium quinoa HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
AUR62032900 Chenopodium quinoa HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
COL.COLO4_33142 Corchorus olitorius HOM05D001549 ORTHO05D005557 2.1e-20 101.7 99 58.6
Migut.O00282 Erythranthe guttata HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
Thhalv10021218m.g Eutrema salsugineum HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
FvH4_4g37310 Fragaria vesca HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Glyma.20G100200 Glycine max HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Gohir.A03G167800 Gossypium hirsutum HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Gohir.D02G190900 Gossypium hirsutum HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Gorai.005G213700 Gossypium raimondii HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
MD13G1001400 Malus domestica HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
MD16G1004700 Malus domestica HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Nitab4.5_0007717g0050 Nicotiana tabacum HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
Oeu038395.2 Olea europaea HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Prupe.1G351300 Prunus persica HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
RcHm_v2.0_Chr4g0447141 Rosa chinensis HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
Sp1g37200 Schrenkiella parvula HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
SGA_v2.0_scaffold25G10728 Striga asiatica HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
SGA_v2.0_scaffold90G27730 Striga asiatica HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
THA.LOC104826513 Tarenaya hassleriana HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 57.6
TWI74G0787 Tripterygium wilfordii HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
TWI77G0899 Tripterygium wilfordii HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
GSVIVG01034357001 Vitis vinifera HOM05D000115 ORTHO05D004431 2.1e-20 101.7 99 58.6
A01p34700 Brassica napus HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 57.6
A03p41510 Brassica napus HOM05D002605 ORTHO05D002842 2.8e-20 101.3 99 57.6
C01p44110 Brassica napus HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 57.6
BolC1t04374H Brassica oleracea HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 57.6
BraA01t03556Z Brassica rapa HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 57.6
BraA03t13305Z Brassica rapa HOM05D002605 ORTHO05D002842 2.8e-20 101.3 99 57.6
CSS0013459 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 58.6
CSS0038631 Camellia sinensis var. sinensis HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 58.6
Carub.0003s1988 Capsella rubella HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 57.6
DCAR_014754 Daucus carota HOM05D000115 ORTHO05D004431 2.8e-20 101.3 90 61.1
HanXRQChr15g0492061 Helianthus annuus HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 58.6
HanXRQChr16g0511551 Helianthus annuus HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 58.6
Lsat_1_v5_gn_0_10420 Lactuca sativa HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 58.6
Lj5A168T99 Lonicera japonica HOM05D000115 ORTHO05D004431 2.8e-20 101.3 99 58.6
BcaC01g01223 Brassica carinata HOM05D000115 ORTHO05D004431 3.6e-20 100.9 99 57.6
C03p89570 Brassica napus HOM05D000115 ORTHO05D004431 3.6e-20 100.9 99 57.6
BolC3t21271H Brassica oleracea HOM05D000115 ORTHO05D004431 3.6e-20 100.9 99 57.6
BraA08t32353Z Brassica rapa HOM05D000115 ORTHO05D004431 3.6e-20 100.9 99 57.6
arahy.Tifrunner.gnm1.ann1.4XY4NZ Arachis hypogaea HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
BolC3t17367H Brassica oleracea HOM05D002605 ORTHO05D002842 4.7e-20 100.5 99 57.6
Cpa.g.sc221.17 Carica papaya HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Ca_12357_v3 Cicer arietinum L. HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
ClCG11G012750 Citrullus lanatus HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Ciclev10016076m.g Citrus clementina HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
MELO3C011765.2 Cucumis melo HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
CsaV3_5G029130 Cucumis sativus L. HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
ECA232G4929 Erigeron canadensis HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Glyma.10G288600 Glycine max HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Lalb_Chr17g0337631 Lupinus albus HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Manes.11G000500 Manihot esculenta HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Medtr1g039380 Medicago truncatula HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Nitab4.5_0001495g0040 Nicotiana tabacum HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 56.6
Peaxi162Scf00171g00033 Petunia axillaris HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 56.6
Peaxi162Scf00643g00534 Petunia axillaris HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 56.6
Phvul.003G000700 Phaseolus vulgaris HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Psat6g101520 Pisum sativum HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Potri.008G003200 Populus trichocarpa HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
QL01p000334 Quercus lobata HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
QL01p000499 Quercus lobata HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Sed0026651 Sechium edule HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
TPR.G34247 Trifolium pratense HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
VMungo0251G1638 Vigna mungo HOM05D000115 ORTHO05D004431 4.7e-20 100.5 99 57.6
Actinidia02654 Actinidia chinensis HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 57.6
Ah.01g011470 Amaranthus hybridus HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 56.6
EL10Ac9g23013 Beta vulgaris HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 56.6
Gohir.A01G012000 Gossypium hirsutum HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 57.6
Gohir.D01G013200 Gossypium hirsutum HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 57.6
Gorai.002G015000 Gossypium raimondii HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 57.6
Nn3g18544 Nelumbo nucifera HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 57.6
THA.LOC104801594 Tarenaya hassleriana HOM05D000115 ORTHO05D004431 6.2e-20 100.1 99 57.6
A08p03210 Brassica napus HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 56.6
CAN.G65.62 Capsicum annuum HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 56.6
Hma1.2p1_0807F.1_g221430 Hydrangea macrophylla HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 57.6
Lalb_Chr10g0094721 Lupinus albus HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 57.6
Solyc06g072140.4 Solanum lycopersicum HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 56.6
Sopen06g028440 Solanum pennellii HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 56.6
PGSC0003DMG400027061 Solanum tuberosum HOM05D000115 ORTHO05D004431 8.0e-20 99.8 99 56.6
Aa31LG8G6670 Aethionema arabicum HOM05D000115 ORTHO05D004431 1.0e-19 99.4 111 53.2
Aqoxy3G04332 Aquilegia oxysepala HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
MSTRG.9721 Avicennia marina HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
CAN.G861.27 Capsicum annuum HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 56.6
MBI06_g12547_MAGBIO Magnolia biondii HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
Nn4g25181 Nelumbo nucifera HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
Phvul.007G012400 Phaseolus vulgaris HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 56.6
PGR142G1070 Punica granatum HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
SalBow8G3554 Salvia bowleyana HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 56.6
Sed0024952 Sechium edule HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
Solyc03g019900.3 Solanum lycopersicum HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 56.6
Sopen03g029720 Solanum pennellii HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 56.6
PGSC0003DMG400015212 Solanum tuberosum HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 56.6
Thecc.02G152500 Theobroma cacao HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
TAR629G2802 Trochodendron aralioides HOM05D000115 ORTHO05D004431 1.0e-19 99.4 99 57.6
CDE07G0435 Ceratophyllum demersum HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 57.6
Glyma.09G285800 Glycine max HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 56.6
Glyma.10G288800 Glycine max HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 56.6
Lj9A411G74 Lonicera japonica HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 56.6
Oeu061186.1 Olea europaea HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 56.6
Oeu062061.1 Olea europaea HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 57.6
Sabra10G0197900 Salix brachista HOM05D000115 ORTHO05D004431 1.4e-19 99.0 99 56.6
BcaB04g17258 Brassica carinata HOM05D000115 ORTHO05D004431 1.8e-19 98.6 99 56.6
BcaB04g20674 Brassica carinata HOM05D000115 ORTHO05D004431 1.8e-19 98.6 106 53.8
Hma1.2p1_0816F.1_g222990 Hydrangea macrophylla HOM05D000115 ORTHO05D004431 1.8e-19 98.6 99 56.6
Lalb_Chr10g0094301 Lupinus albus HOM05D000115 ORTHO05D004431 2.3e-19 98.2 99 56.6
Sc06g0005810 Simmondsia chinensis HOM05D000115 ORTHO05D004431 2.3e-19 98.2 99 55.6
VMungo0720G2982 Vigna mungo HOM05D000115 ORTHO05D004431 2.3e-19 98.2 99 56.6
ATR0124G043 Amborella trichopoda HOM05D000115 ORTHO05D004431 3.1e-19 97.8 99 56.6
Duzib052G0828 Durio zibethinus HOM05D000115 ORTHO05D004431 3.1e-19 97.8 106 53.8
Migut.D02071 Erythranthe guttata HOM05D000115 ORTHO05D004431 3.1e-19 97.8 99 55.6
MBI03_g11898_MAGBIO Magnolia biondii HOM05D000115 ORTHO05D004431 3.1e-19 97.8 99 56.6
Potri.010G254500 Populus trichocarpa HOM05D000115 ORTHO05D004431 3.1e-19 97.8 99 55.6
BcaC09g48954 Brassica carinata HOM05D000115 ORTHO05D004431 4.0e-19 97.4 97 56.7
Duzib051G0002 Durio zibethinus HOM05D000115 ORTHO05D004431 4.0e-19 97.4 99 55.6
Duzib248G0005 Durio zibethinus HOM05D000115 ORTHO05D004431 4.0e-19 97.4 99 55.6
Eucgr.J00332 Eucalyptus grandis HOM05D000115 ORTHO05D004431 4.0e-19 97.4 99 56.6
Actinidia18871 Actinidia chinensis HOM05D000115 ORTHO05D004431 5.2e-19 97.1 99 55.6
HPP92_007448 Vanilla planifolia HOM05D000115 ORTHO05D004431 5.2e-19 97.1 99 56.6
PSO063G5010 Papaver somniferum HOM05D000115 ORTHO05D004431 6.8e-19 96.7 99 55.6
PSO782G1126 Papaver somniferum HOM05D000115 ORTHO05D004431 6.8e-19 96.7 99 55.6
PSO063G1954 Papaver somniferum HOM05D000115 ORTHO05D004431 8.9e-19 96.3 99 55.6
PSO782G1554 Papaver somniferum HOM05D000115 ORTHO05D004431 8.9e-19 96.3 99 55.6
Aa31LG10G3910 Aethionema arabicum HOM05D000115 ORTHO05D004431 1.2e-18 95.9 120 49.2
DCAR_023239 Daucus carota HOM05D000115 ORTHO05D004431 1.2e-18 95.9 99 54.5
Duzib132G0395 Durio zibethinus HOM05D000115 ORTHO05D004431 1.2e-18 95.9 99 55.6
Lj5g0023704 Lotus japonicus HOM05D000115 ORTHO05D004431 2.6e-18 94.7 99 53.5
Mapoly0010s0200 Marchantia polymorpha HOM05D000115 ORTHO05D004431 2.6e-18 94.7 99 54.5
unitig_749.g13725 Utricularia gibba HOM05D000115 ORTHO05D004431 2.6e-18 94.7 99 52.5
FAN07G2544 Fragaria x ananassa HOM05D000115 ORTHO05D004431 3.4e-18 94.4 118 49.2
AUR62020819 Chenopodium quinoa HOM05D000115 ORTHO05D003086 4.4e-18 94.0 95 55.8
Rhsim08G0125600 Rhododendron simsii HOM05D000115 ORTHO05D004431 7.5e-18 93.2 120 48.3
TAR371G1057 Trochodendron aralioides HOM05D000115 ORTHO05D004431 7.5e-18 93.2 99 54.5
SMO146G0290 Selaginella moellendorffii HOM05D000115 ORTHO05D004431 1.3e-17 92.4 99 53.5
CDE04G2233 Ceratophyllum demersum HOM05D000115 ORTHO05D004431 2.2e-17 91.7 95 55.8
DCAR_011404 Daucus carota HOM05D000115 ORTHO05D004431 2.9e-17 91.3 61 75.4
Os01g0691700 Oryza sativa ssp. japonica HOM05D000115 ORTHO05D004431 2.9e-17 91.3 99 53.5
Zm00001eb360690 Zea mays HOM05D000115 ORTHO05D004431 2.9e-17 91.3 99 53.5
Pp3c7_4490 Physcomitrium patens HOM05D000115 ORTHO05D004431 4.9e-17 90.5 99 52.5
Zm00001eb156210 Zea mays HOM05D000115 ORTHO05D004431 6.4e-17 90.1 99 52.5
Pp3c11_22240 Physcomitrium patens HOM05D000115 ORTHO05D004431 8.3e-17 89.7 99 52.5
Pp3c11_22244 Physcomitrium patens HOM05D000115 ORTHO05D004431 8.3e-17 89.7 99 52.5
Dinv11737 Davidia involucrata HOM05D000115 ORTHO05D007434 2.4e-16 88.2 92 56.5
CARHR040390 Cardamine hirsuta HOM05D000115 ORTHO05D004431 3.5e-15 84.3 99 48.5
vmacro17757 Vaccinium macrocarpon HOM05D000115 ORTHO05D004431 3.5e-15 84.3 137 41.6
Cre06.g308350 Chlamydomonas reinhardtii HOM05D000115 ORTHO05D004431 1.3e-14 82.4 98 46.9
Actinidia34681 Actinidia chinensis HOM05D000115 ORTHO05D004431 3.9e-14 80.9 99 48.5
HanXRQChr10g0289921 Helianthus annuus HOM05D000115 ORTHO05D028524 5.0e-14 80.5 60 66.7
SEGI_08115 Sequoiadendron giganteum HOM05D000115 ORTHO05D004431 1.1e-13 79.3 90 52.2
CBR_g46685 Chara braunii HOM05D000115 ORTHO05D004431 1.5e-13 79.0 99 49.5
CARHR168480 Cardamine hirsuta HOM05D000115 ORTHO05D004431 2.1e-12 75.1 70 57.1
Nitab4.5_0007222g0020 Nicotiana tabacum HOM05D000115 ORTHO05D004431 6.2e-12 73.6 82 56.1
Nitab4.5_0000477g0130 Nicotiana tabacum HOM05D000115 ORTHO05D004431 1.1e-11 72.8 82 56.1
unitig_26.g10118 Utricularia gibba HOM05D000115 ORTHO05D004431 3.4e-10 67.8 73 49.3
MCO09G668 Micromonas commoda HOM05D000115 ORTHO05D004431 7.5e-10 66.6 99 43.4
Hund09513 Selenicereus undatus HOM05D000115 ORTHO05D004431 7.5e-10 66.6 73 47.9
PRCOL_00002611 Prasinoderma coloniale HOM05D000115 ORTHO05D004431 1.3e-09 65.9 99 41.4
CBR_g3495 Chara braunii HOM05D000115 ORTHO05D004431 2.2e-09 65.1 45 75.6
AUR62020821 Chenopodium quinoa HOM05D002843 ORTHO05D003086 2.2e-09 65.1 45 75.6
Haze_17400 Corylus avellana HOM05D000115 ORTHO05D004431 2.2e-09 65.1 45 75.6
QL11p041872 Quercus lobata HOM05D000115 ORTHO05D028524 7.1e-08 60.1 44 72.7
MBI06_g22565_MAGBIO Magnolia biondii HOM05D000115 ORTHO05D028524 4.6e-07 57.4 97 37.1
Dinv09759 Davidia involucrata HOM05D000115 ORTHO05D004431 1.0e-06 56.2 41 73.2
Manes.04G161200 Manihot esculenta HOM05D000115 ORTHO05D004431 3.0e-06 54.7 41 70.7


User provided reference genes

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