Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.8e-176 621.3 294 100.0
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.8e-136 488.4 289 80.6
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 6.5e-136 487.6 314 73.6
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.5e-136 487.3 297 78.5
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.6e-134 481.9 298 78.2
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 6.7e-133 477.6 299 74.6
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.0e-132 476.1 299 74.9
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-132 475.7 299 74.9
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 5.7e-132 474.6 298 77.9
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.1e-130 470.3 325 70.2
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 5.3e-130 468.0 296 74.7
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 5.3e-130 468.0 325 70.5
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.6e-129 466.5 294 74.5
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 4.5e-129 464.9 325 69.5
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 5.9e-129 464.5 294 74.5
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-128 463.0 302 72.8
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.5e-127 459.1 299 72.9
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 2.5e-127 459.1 297 73.1
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-127 459.1 297 73.1
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 2.5e-127 459.1 297 73.1
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 7.5e-124 447.6 295 72.5
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.2e-123 444.1 300 71.0
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.9e-120 435.6 299 70.6
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 4.2e-119 431.8 291 70.4
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.2e-116 423.7 280 72.1
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 2.2e-115 419.5 286 71.0
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 3.5e-113 412.1 296 63.5
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.0e-112 410.6 281 70.1
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 2.5e-111 406.0 286 68.5
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.1e-110 402.9 286 68.9
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-110 402.9 286 68.9
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-110 402.9 286 68.9
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-110 402.1 287 66.9
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-110 402.1 289 66.8
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 6.1e-110 401.4 286 68.5
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.4e-109 400.2 288 67.7
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 8.8e-109 397.5 286 67.8
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 4.4e-108 395.2 288 65.6
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 8.3e-107 391.0 289 66.1
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 2.0e-105 386.3 288 63.9
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.1e-103 380.6 247 72.1
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.1e-102 376.3 289 60.2
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.4e-101 373.6 297 59.3
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 4.0e-101 372.1 274 62.8
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.0e-101 372.1 272 61.4
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.0e-101 372.1 272 61.4
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 6.8e-101 371.3 298 57.7
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.2e-100 370.5 317 57.1
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 3.4e-100 369.0 298 58.1
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 9.8e-100 367.5 274 60.2
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.3e-99 367.1 287 60.6
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.3e-99 367.1 298 58.1
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 2.9e-99 365.9 301 59.5
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 1.1e-98 364.0 309 56.3
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.4e-98 363.6 304 56.9
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 5.4e-98 361.7 265 61.1
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 7.0e-98 361.3 308 54.5
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 7.0e-98 361.3 291 57.7
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 9.2e-98 360.9 308 55.8
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-97 360.5 306 56.5
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-97 360.5 306 56.5
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-97 360.5 306 56.5
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.0e-97 359.8 308 54.2
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.7e-97 359.4 306 55.9
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 3.5e-97 359.0 273 60.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.6e-97 358.6 299 57.2
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.9e-97 358.2 271 60.9
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.9e-97 358.2 308 53.9
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 5.9e-97 358.2 233 67.4
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.3e-96 357.1 280 59.3
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 1.7e-96 356.7 289 58.1
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.0e-96 355.9 299 56.2
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.0e-96 355.9 298 57.0
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 6.6e-96 354.8 277 58.5
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 6.6e-96 354.8 283 56.5
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 6.6e-96 354.8 305 56.7
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.1e-95 354.0 296 56.1
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.1e-95 354.0 266 62.8
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.3e-95 352.4 278 57.6
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 3.3e-95 352.4 276 59.4
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 1.2e-94 350.5 303 55.1
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 2.1e-94 349.7 284 56.3
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 6.2e-94 348.2 291 56.4
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 6.2e-94 348.2 306 53.9
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 8.0e-94 347.8 306 55.9
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.0e-93 347.4 288 56.9
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.0e-93 347.4 291 55.3
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.8e-93 346.7 281 55.2
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.8e-93 346.7 280 57.1
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.8e-93 346.7 293 56.3
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.3e-93 346.3 304 53.6
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 5.2e-93 345.1 301 54.5
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 5.2e-93 345.1 275 57.5
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 8.9e-93 344.4 274 57.3
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.2e-92 344.0 279 58.4
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.2e-92 344.0 265 60.8
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.0e-92 343.2 277 57.4
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 3.4e-92 342.4 236 63.1
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 4.4e-92 342.0 309 52.4
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 7.5e-92 341.3 271 57.9
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 1.3e-91 340.5 317 52.1
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.3e-91 340.5 286 56.3
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.2e-91 339.7 313 53.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 2.2e-91 339.7 276 56.9
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 4.1e-90 335.5 274 56.9
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 4.1e-90 335.5 233 60.5
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 7.0e-90 334.7 275 57.1
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.2e-89 334.0 230 61.3
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 3.5e-89 332.4 238 61.8
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 4.6e-89 332.0 275 57.1
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 1.0e-88 330.9 236 58.9
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.7e-88 330.1 236 58.5
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 3.9e-88 328.9 272 55.5
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 5.0e-88 328.6 266 56.8
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 6.6e-88 328.2 286 52.4
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.6e-86 323.6 278 54.3
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 1.8e-85 320.1 221 63.3
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 2.0e-84 316.6 266 55.3
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 3.4e-84 315.8 228 59.6
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 5.8e-84 315.1 227 59.5
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 9.8e-84 314.3 200 72.0
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 2.9e-83 312.8 228 62.3
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 3.7e-83 312.4 236 59.7
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 8.3e-83 311.2 290 49.7
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.2e-82 309.3 244 58.2
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 6.6e-80 301.6 220 60.5
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 8.6e-80 301.2 299 49.5
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.9e-79 300.1 223 60.1
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 9.5e-79 297.7 211 62.1
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 6.2e-78 295.0 232 56.0
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.1e-78 294.7 253 51.4
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.8e-77 293.5 265 53.6
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 3.1e-77 292.7 193 65.3
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 1.2e-76 290.8 244 54.1
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 3.2e-74 282.7 290 46.9
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 3.5e-73 279.3 230 54.3
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.7e-72 276.9 195 62.6
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.2e-70 270.8 228 53.1
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.7e-70 268.9 292 47.3
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 2.0e-68 263.5 227 55.1
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 2.9e-67 259.6 236 54.7
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.9e-66 256.9 267 47.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 4.2e-66 255.8 228 50.4
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.1e-65 253.4 218 51.8
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 1.7e-64 250.4 286 44.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.5e-63 247.3 235 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 6.2e-62 241.9 230 50.4
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.2e-60 237.7 237 46.8
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 7.6e-60 235.0 217 48.8
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 5.4e-58 228.8 242 46.7
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 7.1e-58 228.4 230 47.0
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 9.3e-58 228.0 226 46.0
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 4.6e-57 225.7 153 64.1
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.4e-55 218.4 227 46.7
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.3e-54 217.6 229 44.5
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.8e-54 216.5 263 41.8
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 6.2e-54 215.3 270 44.1
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.4e-52 209.5 182 57.1
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 4.5e-52 209.1 223 45.7
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 4.5e-52 209.1 246 42.7
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 3.8e-51 206.1 226 43.8
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 5.5e-50 202.2 150 58.0
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 5.1e-48 195.7 233 44.6
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.3e-47 192.6 222 42.3
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 4.3e-47 192.6 197 45.7
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.6e-47 192.2 315 36.2
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.8e-45 187.2 223 42.6
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 7.6e-44 181.8 127 60.6
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 9.3e-42 174.9 157 51.0
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.2e-41 174.5 152 53.9
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 4.3e-39 166.0 101 71.3
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 7.2e-34 148.7 107 62.6
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 9.3e-34 148.3 87 77.0
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-32 144.8 96 68.8
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 7.2e-18 95.5 49 83.7
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.2e-12 78.2 74 52.7
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 3.5e-12 76.6 102 41.2
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 1.3e-06 58.2 41 56.1


User provided reference genes

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