Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 0.0e+00 1158.3 594 100.0
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.2e-309 1065.8 594 92.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 2.7e-306 1054.7 594 90.6
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 9.0e-302 1039.6 594 88.7
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.0e-297 1026.2 588 89.3
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 5.1e-297 1023.8 593 88.5
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 2.4e-294 1015.0 588 88.1
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 5.5e-291 1003.8 589 87.8
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 2.1e-290 1001.9 589 87.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 2.1e-290 1001.9 589 87.6
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.8e-286 988.8 590 86.9
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.4e-286 988.4 590 86.8
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.2e-282 976.1 577 86.1
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.2e-274 949.5 525 91.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.3e-272 941.4 579 84.1
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.5e-264 916.0 596 79.7
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 4.0e-217 758.4 600 65.3
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.2e-215 752.7 600 64.5
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.9e-214 749.6 563 68.9
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 9.2e-214 747.3 601 64.4
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.7e-212 743.0 600 64.7
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.3e-207 726.9 597 63.1
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.8e-202 709.1 603 62.7
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 8.9e-201 704.1 599 60.6
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 5.8e-200 701.4 608 60.9
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 5.8e-200 701.4 600 61.0
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.8e-199 698.7 612 60.3
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 4.1e-198 695.3 604 61.1
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 3.9e-196 688.7 607 60.5
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 9.6e-195 684.1 599 61.6
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 9.6e-195 684.1 595 60.3
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.2e-194 683.7 606 59.6
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.6e-194 683.3 604 59.3
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 3.6e-194 682.2 617 60.1
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 8.1e-194 681.0 606 60.1
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.4e-193 680.2 604 59.4
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.8e-193 679.9 601 59.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 6.9e-193 677.9 604 59.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 1.3e-191 673.7 606 59.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 8.4e-191 671.0 604 59.1
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 2.3e-188 662.9 595 59.8
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.8e-186 656.0 619 57.8
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.1e-185 652.5 604 58.3
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.2e-184 650.6 597 58.5
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.5e-184 650.2 604 57.9
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.6e-184 649.4 603 59.4
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.5e-184 648.7 722 52.1
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 7.6e-184 647.9 637 56.7
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.2e-183 646.4 604 57.3
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.2e-182 642.5 600 57.5
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 7.1e-182 641.3 597 58.5
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 9.3e-182 641.0 599 58.6
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 9.3e-182 641.0 600 57.0
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 9.3e-182 641.0 604 57.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 2.1e-181 639.8 604 57.0
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 4.6e-181 638.6 574 59.1
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.0e-180 637.5 553 60.4
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.8e-180 636.7 600 56.5
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.8e-180 636.7 613 57.3
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.6e-178 630.2 548 61.1
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 3.6e-178 629.0 609 57.3
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 6.2e-178 628.2 738 49.3
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 3.1e-177 625.9 611 56.8
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 5.3e-177 625.2 596 55.5
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 9.0e-177 624.4 588 58.7
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.6e-176 622.9 605 55.9
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 1.3e-175 620.5 598 56.0
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.9e-175 619.4 592 56.2
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 2.4e-174 616.3 561 62.2
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 3.2e-174 615.9 596 55.9
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 3.5e-173 612.5 628 53.2
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 7.9e-173 611.3 543 65.7
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.0e-172 610.9 601 56.2
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 2.3e-172 609.8 671 52.0
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 6.7e-172 608.2 596 55.7
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 8.7e-172 607.8 532 60.7
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.5e-171 607.1 601 54.9
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.5e-171 606.3 613 55.5
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.3e-171 605.5 610 53.8
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.3e-170 604.0 600 54.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 4.8e-170 602.1 594 54.0
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 4.0e-169 599.0 597 54.4
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 5.3e-169 598.6 605 54.9
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 2.0e-168 596.7 553 59.9
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.6e-168 596.3 621 53.8
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 5.8e-168 595.1 697 50.1
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.4e-166 590.5 707 48.5
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 4.2e-166 589.0 598 54.7
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.8e-164 583.6 597 54.6
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.1e-161 574.3 609 53.5
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 1.1e-161 574.3 600 51.7
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.1e-161 572.4 608 53.5
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 4.5e-160 568.9 617 52.7
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 7.2e-158 561.6 368 81.2
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.1e-157 560.1 607 51.7
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 3.6e-157 559.3 591 53.6
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.3e-156 556.6 588 54.8
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.1e-155 554.3 598 52.5
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.1e-155 554.3 600 52.0
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.1e-153 545.8 539 55.5
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 5.3e-153 545.4 610 50.5
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 2.6e-152 543.1 669 48.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.3e-146 524.2 476 60.3
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.3e-146 521.9 600 50.7
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.1e-145 521.2 427 63.5
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 5.9e-144 515.4 483 56.9
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 9.4e-142 508.1 497 60.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 4.8e-138 495.7 593 48.2
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 8.5e-135 485.0 600 48.8
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.7e-133 479.2 362 66.9
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.1e-133 478.8 485 53.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.7e-130 470.7 612 44.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 5.0e-127 459.1 596 43.0
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 6.1e-125 452.2 408 59.3
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-122 444.5 446 56.5
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 2.8e-122 443.4 402 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.9e-119 433.3 590 43.7
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 6.1e-117 425.6 394 58.4
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 8.8e-116 421.8 470 48.9
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 5.7e-115 419.1 367 61.3
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 2.3e-108 397.1 467 50.1
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 3.0e-108 396.7 312 68.3
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.2e-107 394.8 366 59.8
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.5e-102 375.2 351 58.1
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 2.7e-96 357.1 466 46.6
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.5e-94 350.5 606 37.1
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 4.0e-92 343.2 419 48.7
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.9e-81 307.8 472 42.6
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.9e-81 307.8 227 70.0
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.6e-78 296.2 440 43.2
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.4e-68 264.2 216 63.0
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.8e-66 256.9 304 49.7
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 3.8e-66 256.9 262 56.9
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.3e-63 248.4 231 58.0
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.3e-62 243.8 376 41.5
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 9.9e-59 232.3 180 62.8
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 1.2e-56 225.3 509 37.1
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.6e-56 223.4 203 55.7
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 6.0e-56 223.0 282 45.0
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.4e-52 211.8 164 64.0
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-52 209.1 231 45.9
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 7.6e-51 206.1 206 53.4
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.2e-49 200.3 355 40.8
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.7e-48 197.6 204 50.0
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.8e-44 184.9 303 41.3
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 2.9e-42 177.6 183 53.6
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.9e-41 174.9 183 53.0
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.0e-39 167.5 119 69.7
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 6.7e-39 166.4 162 54.3
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.5e-38 165.2 231 44.6
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.9e-38 164.9 234 43.6
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.4e-33 148.7 197 46.2
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.4e-25 122.1 133 44.4
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 4.2e-25 120.6 142 44.4
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 4.1e-20 104.0 171 38.6
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 5.3e-20 103.6 173 40.5
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 9.1e-20 102.8 80 62.5
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 2.0e-19 101.7 104 49.0
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.0e-18 99.4 131 45.8
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.3e-18 99.0 164 36.0
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 2.9e-18 97.8 620 24.0
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 3.8e-18 97.4 551 24.0
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 6.5e-18 96.7 76 63.2
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.5e-18 96.7 65 69.2
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 8.5e-18 96.3 73 64.4
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.5e-17 95.5 184 39.7
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 4.2e-17 94.0 77 59.7
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 2.7e-16 91.3 134 39.6
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 3.0e-15 87.8 69 72.5
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 4.0e-15 87.4 71 64.8
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 2.0e-14 85.1 67 73.1
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 2.6e-14 84.7 108 45.4
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 4.1e-12 77.4 202 32.2
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 3.5e-11 74.3 281 26.7
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.0e-10 70.5 85 49.4
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 8.5e-10 69.7 75 49.3
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.5e-09 68.9 53 64.2
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 2.5e-09 68.2 56 58.9
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 2.5e-09 68.2 68 55.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 8.0e-08 63.2 41 78.0
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.8e-07 62.0 45 66.7
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.0e-07 60.8 54 59.3
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 6.8e-07 60.1 95 41.1
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 8.8e-07 59.7 45 68.9
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 2.6e-06 58.2 77 39.0


User provided reference genes

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