Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 0.0e+00 1102.0 561 100.0
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.8e-259 899.0 566 82.5
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 2.3e-259 898.7 565 83.7
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.5e-250 869.4 565 81.2
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 3.4e-250 868.2 565 81.2
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 9.5e-245 850.1 568 80.3
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 7.6e-226 787.3 608 72.0
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.2e-218 763.5 566 73.7
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.3e-217 760.0 576 71.7
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 3.8e-217 758.4 568 73.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.4e-216 756.5 568 73.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 9.3e-216 753.8 568 73.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 2.5e-189 666.0 541 69.9
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.8e-174 616.7 600 59.7
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.2e-132 476.9 591 48.2
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.7e-130 469.9 593 48.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 6.0e-130 468.8 628 45.4
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.6e-129 465.3 592 47.8
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 3.3e-128 463.0 625 46.7
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.2e-127 461.1 567 48.9
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 6.2e-127 458.8 567 48.7
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 6.8e-126 455.3 683 44.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.5e-125 454.1 615 46.7
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.6e-125 453.4 633 45.5
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 7.5e-125 451.8 644 43.8
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 7.5e-125 451.8 667 43.9
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.3e-124 451.1 629 44.8
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.7e-124 450.7 630 46.2
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 8.3e-124 448.4 628 45.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 2.4e-123 446.8 622 45.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 5.4e-123 445.7 681 43.6
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.5e-122 443.0 541 49.7
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 8.6e-121 438.3 643 42.3
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.1e-120 438.0 591 45.0
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.6e-119 434.1 644 42.4
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 6.2e-119 432.2 621 44.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 6.2e-119 432.2 576 46.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.8e-118 430.6 595 44.0
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.3e-118 430.3 652 41.7
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 4.0e-118 429.5 606 44.9
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.5e-117 427.6 600 43.8
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 2.6e-117 426.8 616 42.0
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.3e-116 424.5 410 52.9
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.9e-116 423.3 618 40.8
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 6.4e-116 422.2 617 42.0
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 8.4e-116 421.8 601 42.9
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.2e-115 419.9 600 44.8
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 3.5e-114 416.4 410 52.9
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 3.0e-113 413.3 513 47.8
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.8e-111 406.8 638 40.4
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 4.7e-111 406.0 651 40.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.7e-111 406.0 409 52.3
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.4e-110 404.4 629 42.6
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.5e-109 401.0 627 40.5
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.8e-109 399.1 589 44.1
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 5.8e-109 399.1 641 39.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.7e-108 397.5 644 41.5
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.4e-107 394.4 640 39.5
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.9e-107 394.0 590 40.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 5.4e-107 392.5 624 40.1
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.2e-106 391.3 652 40.0
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.6e-106 391.0 580 42.1
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.7e-106 390.2 645 38.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.5e-104 384.4 599 42.1
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.9e-104 384.0 643 39.7
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.6e-104 382.5 582 43.6
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.6e-103 380.9 436 48.9
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 8.1e-103 378.6 653 39.1
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 9.0e-102 375.2 431 46.9
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 7.6e-101 372.1 603 40.5
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.9e-100 370.2 555 41.3
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.1e-99 368.2 513 44.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 5.4e-99 365.9 612 38.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.1e-98 364.0 581 40.1
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.5e-98 363.2 503 43.7
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.8e-97 360.9 614 39.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.9e-96 357.5 663 36.5
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 3.3e-96 356.7 663 36.7
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.3e-95 354.8 661 36.6
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.4e-94 350.5 643 35.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 4.0e-94 349.7 572 38.3
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 5.5e-91 339.3 611 37.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.8e-89 334.3 355 50.7
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.9e-89 333.2 645 36.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 4.3e-88 329.7 426 43.2
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 5.6e-88 329.3 613 37.4
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.1e-87 327.4 660 34.8
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 4.5e-77 293.1 473 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 2.5e-75 287.3 441 37.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 3.9e-73 280.0 641 34.8
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 8.7e-73 278.9 371 44.5
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 8.7e-73 278.9 465 37.2
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 5.0e-68 263.1 352 43.5
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.5e-67 260.8 440 39.1
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.3e-65 254.2 446 37.2
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 8.8e-65 252.3 425 37.2
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 2.0e-64 251.1 619 33.3
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 9.7e-64 248.8 345 42.0
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-60 238.0 497 34.6
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 3.9e-57 226.9 622 31.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.2e-57 226.5 528 33.7
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.8e-57 225.7 416 35.1
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 9.1e-54 215.7 384 38.8
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.5e-51 208.4 241 46.5
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-49 200.7 331 37.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-47 194.5 539 29.9
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 4.1e-46 190.3 204 50.5
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.7e-45 187.6 229 45.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 4.7e-42 176.8 155 61.3
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.0e-42 176.0 475 30.7
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 4.0e-41 173.7 239 40.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.7e-39 168.3 154 59.7
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-38 165.2 465 29.9
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-38 164.1 524 30.3
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 4.5e-37 160.2 271 32.8
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 6.5e-36 156.4 189 47.1
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.5e-35 154.5 134 55.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.3e-35 154.1 218 43.6
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 4.2e-35 153.7 155 55.5
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-33 147.9 402 30.3
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-30 138.7 130 53.8
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 5.0e-28 130.2 117 55.6
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 5.0e-28 130.2 117 55.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.7e-26 123.6 544 28.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-25 122.1 297 29.3
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.9e-25 119.4 131 48.1
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-21 108.2 132 41.7
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.7e-21 107.8 123 48.0
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.8e-17 93.2 251 31.5
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 8.9e-17 92.8 94 46.8
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 7.0e-14 83.2 91 48.4


User provided reference genes

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