Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.4e-145 518.8 266 100.0
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.5e-139 499.6 266 96.2
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.6e-139 498.8 266 96.2
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.6e-139 498.8 266 96.2
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.2e-138 495.7 266 95.9
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.2e-138 495.7 266 95.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 4.8e-138 494.6 266 95.1
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.1e-137 493.4 266 95.5
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-137 493.0 266 95.9
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-137 493.0 266 95.9
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.4e-137 493.0 266 95.9
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.4e-137 493.0 266 95.9
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 2.4e-137 492.3 266 94.7
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 5.3e-137 491.1 264 95.8
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.5e-136 489.6 266 95.5
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.3e-135 486.5 266 93.6
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 9.4e-134 480.3 262 94.3
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.1e-133 479.2 266 92.9
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 2.0e-131 472.6 269 91.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 3.0e-116 422.2 272 83.5
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.5e-110 400.6 270 79.3
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.8e-109 399.1 272 80.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.6e-107 392.5 273 78.0
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.6e-107 392.5 280 76.4
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.6e-107 392.5 275 78.9
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.4e-107 391.7 276 76.4
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.3e-106 390.2 280 75.7
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.3e-106 390.2 280 75.7
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 4.9e-106 388.3 273 76.9
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.3e-106 387.9 274 78.1
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-105 387.1 277 76.9
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.1e-105 387.1 277 76.9
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.4e-105 386.7 275 76.7
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.8e-105 386.3 280 75.0
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 3.1e-105 385.6 273 76.9
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 4.1e-105 385.2 273 75.8
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.4e-105 384.8 275 75.6
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 5.4e-105 384.8 275 75.6
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 7.0e-105 384.4 271 76.4
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.2e-104 383.6 273 75.8
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.0e-104 382.9 281 74.7
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.7e-104 382.5 265 77.4
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.7e-104 382.5 267 77.2
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.7e-104 382.5 280 74.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 5.9e-104 381.3 272 75.0
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 5.9e-104 381.3 271 75.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 5.9e-104 381.3 271 75.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 5.9e-104 381.3 276 75.4
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.0e-103 380.6 270 75.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.0e-103 380.6 275 73.8
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.0e-103 380.6 278 74.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.0e-103 380.6 267 74.9
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.3e-103 380.2 270 75.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 1.3e-103 380.2 266 77.4
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.7e-103 379.8 266 78.6
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.9e-103 379.0 269 77.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.9e-103 379.0 275 74.9
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.9e-103 379.0 271 76.0
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 3.8e-103 378.6 275 74.5
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.0e-103 378.3 275 74.5
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.6e-103 377.9 275 74.5
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 6.6e-103 377.9 268 75.7
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.1e-102 377.1 272 76.5
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.5e-102 376.7 273 73.6
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.5e-102 376.7 232 85.3
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.5e-102 376.7 273 75.1
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.9e-102 376.3 272 75.4
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.5e-102 375.9 274 74.1
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 7.3e-102 374.4 271 74.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 7.3e-102 374.4 273 71.8
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 9.5e-102 374.0 271 74.9
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.2e-101 373.6 273 74.7
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.6e-101 373.2 271 74.2
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.8e-101 372.5 229 85.2
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.8e-101 372.5 263 74.5
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 8.0e-101 370.9 283 73.9
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 8.0e-101 370.9 283 73.9
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.0e-101 370.9 276 72.1
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.0e-100 370.5 275 74.2
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.8e-100 369.8 258 78.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 4.0e-100 368.6 280 73.6
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 4.0e-100 368.6 270 71.5
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 5.2e-100 368.2 281 72.6
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 8.9e-100 367.5 274 72.6
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 8.9e-100 367.5 271 72.3
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.2e-99 367.1 283 73.1
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.0e-99 366.3 272 72.1
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 2.6e-99 365.9 274 73.4
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 3.4e-99 365.5 269 73.2
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.4e-99 365.2 276 72.1
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.7e-98 363.2 272 72.4
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.7e-98 363.2 268 73.9
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.2e-98 362.8 269 73.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 4.9e-98 361.7 227 83.7
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 4.9e-98 361.7 274 71.5
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.1e-97 360.5 274 71.9
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.1e-97 360.5 285 70.9
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.4e-97 359.4 270 72.2
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.4e-97 359.4 273 72.2
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 3.2e-97 359.0 271 73.8
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 4.1e-97 358.6 274 70.8
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 7.0e-97 357.8 218 84.9
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.2e-96 357.1 281 71.2
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.0e-96 356.3 272 71.0
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 2.7e-96 355.9 275 72.0
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 3.5e-96 355.5 230 80.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 4.6e-96 355.1 277 70.8
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 5.9e-96 354.8 270 73.7
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 7.8e-96 354.4 198 89.9
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.0e-95 354.0 270 72.2
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.7e-95 353.2 280 70.0
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.7e-95 353.2 276 69.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 3.0e-95 352.4 273 72.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.3e-94 348.6 274 71.2
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 7.3e-94 347.8 273 70.3
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 4.7e-93 345.1 274 69.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 3.5e-88 328.9 193 84.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 2.8e-85 319.3 281 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 3.1e-84 315.8 220 75.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.4e-83 312.0 218 74.3
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 4.4e-83 312.0 198 78.8
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-76 289.7 238 68.9
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.4e-76 289.7 169 85.8
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 5.4e-65 251.9 159 81.8
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-63 247.3 134 92.5
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 3.9e-63 245.7 192 70.8
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 3.6e-61 239.2 192 71.9
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.3e-58 230.7 161 69.6
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.4e-57 226.5 198 66.2
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 4.8e-53 212.2 164 63.4
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.9e-46 190.3 271 48.0
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 7.6e-43 178.3 124 72.6
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-39 167.5 96 84.4
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.8e-39 167.2 146 67.8
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.9e-39 166.0 232 48.7
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.4e-36 157.5 184 49.5
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.4e-36 157.5 184 49.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.0e-22 110.5 80 77.5
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.3e-18 97.8 109 56.0
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.1e-12 75.1 194 32.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.7e-10 70.9 175 30.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.2e-09 66.2 38 84.2
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.1e-08 63.9 38 84.2
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.3e-07 60.5 60 48.3


User provided reference genes

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