Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035100 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.6e-31 138.7 65 100.0
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 1.0e-09 66.2 38 86.8
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 1.0e-09 66.2 38 86.8
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 1.0e-09 66.2 38 86.8
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 1.0e-09 66.2 38 86.8
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 1.0e-09 66.2 38 86.8
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 1.3e-09 65.9 32 100.0
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 1.3e-09 65.9 32 100.0
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 1.3e-09 65.9 32 100.0
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 1.3e-09 65.9 32 100.0
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 2.3e-09 65.1 38 84.2
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 3.0e-09 64.7 39 79.5
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 3.9e-09 64.3 32 96.9
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
COL.COLO4_05009 Corchorus olitorius HOM05D005653 ORTHO05D007013 5.1e-09 63.9 34 88.2
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 5.1e-09 63.9 32 93.8
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 8.7e-09 63.2 32 90.6
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 8.7e-09 63.2 32 90.6
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 1.1e-08 62.8 32 90.6
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 93.8
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 93.8
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 90.6
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 90.6
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 90.6
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 87.5
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 87.5
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 1.5e-08 62.4 32 90.6
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 1.9e-08 62.0 32 90.6
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 1.9e-08 62.0 32 87.5
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 1.9e-08 62.0 32 90.6
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 1.9e-08 62.0 32 90.6
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 2.5e-08 61.6 32 87.5
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 2.5e-08 61.6 32 87.5
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 2.5e-08 61.6 32 87.5
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 2.5e-08 61.6 32 93.8
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 2.5e-08 61.6 32 87.5
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 2.5e-08 61.6 32 87.5
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 3.3e-08 61.2 32 84.4
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 3.3e-08 61.2 32 90.6
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 3.3e-08 61.2 32 93.8
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 90.6
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 87.5
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 87.5
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 90.6
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 90.6
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 84.4
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 87.5
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 4.3e-08 60.8 32 90.6
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 84.4
CAN.G789.3 Capsicum annuum HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 87.5
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 87.5
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 87.5
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 84.4
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 84.4
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 84.4
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 84.4
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 84.4
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 5.7e-08 60.5 32 87.5
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 7.4e-08 60.1 32 87.5
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 7.4e-08 60.1 32 84.4
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 9.7e-08 59.7 32 87.5
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 9.7e-08 59.7 38 78.9
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 1.3e-07 59.3 32 87.5
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 1.3e-07 59.3 32 87.5
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 1.6e-07 58.9 32 84.4
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 1.6e-07 58.9 32 81.2
ATR0561G080 Amborella trichopoda HOM05D005653 ORTHO05D007013 2.2e-07 58.5 34 82.4
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 2.2e-07 58.5 32 87.5
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 2.2e-07 58.5 32 87.5
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 2.2e-07 58.5 32 84.4
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 2.2e-07 58.5 32 84.4
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 3.7e-07 57.8 34 82.4
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 3.7e-07 57.8 32 78.1
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 4.8e-07 57.4 32 84.4
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 4.8e-07 57.4 32 84.4
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 4.8e-07 57.4 32 84.4
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 1.1e-06 56.2 32 87.5
BcaB02g10419 Brassica carinata HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
BcaC02g11288 Brassica carinata HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
BcaC02g11290 Brassica carinata HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
A05p13720 Brassica napus HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
C04p17970 Brassica napus HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
BolC4t23343H Brassica oleracea HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
BraA05t20308Z Brassica rapa HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
CARHR125520 Cardamine hirsuta HOM05D001637 ORTHO05D002178 3.1e-06 54.7 24 91.7
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 4.1e-06 54.3 32 71.9
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 6.9e-06 53.5 32 78.1
Cfa025335 Carpinus fangiana HOM05D005653 ORTHO05D007013 9.0e-06 53.1 37 62.2
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 9.0e-06 53.1 32 75.0


User provided reference genes

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