Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 0.0e+00 1468.4 749 100.0
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1338.6 757 90.9
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 0.0e+00 1325.8 760 90.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 0.0e+00 1310.0 761 89.8
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 0.0e+00 1270.0 760 86.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1236.5 755 85.8
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1218.0 754 84.5
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1217.6 757 84.9
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 0.0e+00 1213.0 757 84.5
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 0.0e+00 1212.2 754 84.1
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1211.1 757 84.4
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 0.0e+00 1177.5 755 81.5
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 0.0e+00 1167.9 760 80.5
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 0.0e+00 1142.9 655 89.8
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1102.4 760 75.3
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1090.5 755 74.8
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1082.0 757 74.5
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1077.0 754 74.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1076.2 763 73.5
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 1.0e-311 1072.8 755 74.0
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 7.7e-311 1070.1 755 73.5
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 755 73.8
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.0e-310 1068.1 757 72.4
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.4e-307 1059.3 758 73.1
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 3.1e-307 1058.1 753 73.7
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 4.0e-307 1057.7 760 72.6
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 4.0e-307 1057.7 753 72.6
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 743 73.5
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 755 72.3
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 753 73.0
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 2.2e-305 1052.0 754 72.5
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.8e-305 1051.2 754 73.3
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 747 72.4
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 8.4e-305 1050.0 755 72.1
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 755 71.1
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 2.3e-302 1042.0 795 69.1
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.0e-302 1041.6 752 73.4
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 5.6e-301 1037.3 763 71.2
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 2.1e-300 1035.4 749 72.4
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 6.2e-300 1033.9 752 71.8
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.4e-299 1032.7 759 72.7
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 4.0e-299 1031.2 758 71.8
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 2.0e-298 1028.9 753 72.1
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.6e-298 1028.5 755 71.9
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.9e-297 1024.2 752 70.3
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.1e-296 1023.1 756 71.0
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.1e-296 1023.1 758 70.4
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 2.4e-296 1021.9 753 71.6
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.4e-296 1021.9 752 70.3
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 3.2e-296 1021.5 752 71.5
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 7.1e-296 1020.4 756 70.5
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 755 71.1
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.6e-295 1019.2 746 71.8
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.6e-295 1019.2 750 69.7
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 752 70.6
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 4.6e-295 1017.7 755 69.7
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.0e-294 1016.5 750 70.9
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.3e-294 1016.1 762 70.2
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 1.7e-294 1015.8 757 69.9
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 2.3e-294 1015.4 761 69.8
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 2.3e-294 1015.4 753 71.3
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 3.9e-294 1014.6 753 71.3
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 8.7e-294 1013.4 752 70.1
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.5e-293 1011.9 752 69.4
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 7.3e-293 1010.4 749 70.9
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.3e-292 1009.6 750 70.4
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 2.8e-292 1008.4 743 71.2
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 8.1e-292 1006.9 760 69.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.1e-291 1006.5 792 68.2
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.8e-291 1005.7 793 67.6
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.3e-291 1004.2 778 69.0
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-290 1003.0 790 67.5
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 9.9e-290 1000.0 755 68.3
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 3.8e-289 998.0 754 70.3
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.9e-289 997.7 752 71.3
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.3e-286 989.6 747 68.8
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.8e-286 989.2 761 67.8
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.9e-286 988.0 755 68.5
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.1e-285 986.5 753 67.3
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.3e-285 984.9 752 70.9
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 3.3e-285 984.9 749 67.0
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.1e-283 979.9 777 67.4
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 5.8e-282 974.2 709 72.8
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 4.6e-279 964.5 715 71.5
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.3e-278 962.2 746 66.4
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 3.9e-278 961.4 755 66.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 6.7e-270 934.1 718 68.1
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 4.3e-269 931.4 751 67.1
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 8.2e-268 927.2 645 75.7
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.1e-267 925.2 705 69.5
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 4.5e-266 921.4 652 73.6
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 1.8e-254 882.9 839 57.8
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 4.2e-248 861.7 745 60.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 2.7e-239 832.4 747 58.9
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 8.3e-228 794.3 538 75.5
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.4e-222 776.9 721 59.8
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 4.3e-216 755.4 503 76.9
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.8e-215 752.7 558 70.6
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.6e-210 736.9 563 68.2
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 2.3e-206 723.0 606 63.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 8.1e-183 644.8 621 57.0
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.8e-182 643.7 521 66.4
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 3.3e-176 622.9 684 53.5
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.6e-165 586.6 444 68.0
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.2e-164 583.6 448 68.1
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.9e-163 580.5 428 69.4
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.2e-156 557.0 445 66.5
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.8e-143 513.5 426 63.6
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 3.6e-138 496.5 433 58.9
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.3e-137 493.8 434 58.3
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.1e-134 483.0 402 62.9
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 3.2e-123 446.8 372 63.7
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.4e-121 441.4 372 63.2
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.8e-121 441.0 496 53.6
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 8.0e-98 362.5 223 81.2
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.1e-91 342.0 261 69.7
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.4e-88 330.5 206 79.1
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 4.0e-65 253.8 160 78.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.5e-64 251.9 231 59.3
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 4.9e-63 246.9 169 72.8
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 2.5e-59 234.6 140 84.3
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.1e-49 202.6 141 71.6
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.5e-48 198.7 304 41.4
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 1.3e-47 195.7 156 64.7
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.5e-47 193.4 132 73.5
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.0e-44 186.0 301 44.2
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 6.7e-44 183.3 101 86.1
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 2.1e-42 178.3 195 51.3
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 5.9e-40 170.2 106 80.2
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 3.9e-36 157.5 135 64.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 6.3e-34 150.2 93 81.7
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 7.2e-30 136.7 151 50.3
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 9.4e-30 136.3 290 34.8
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 6.7e-28 130.2 146 49.3
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.3e-26 125.9 93 67.7
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.1e-25 122.9 86 70.9
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.2e-21 109.4 132 50.8
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 6.1e-21 107.1 105 55.2
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.8e-18 98.2 71 67.6
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 2.4e-17 95.1 147 46.3
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 9.1e-17 93.2 56 73.2
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.0e-16 92.0 52 84.6
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.5e-16 90.9 53 83.0
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.0e-15 89.7 56 69.6
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 6.5e-15 87.0 52 78.8
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 4.7e-13 80.9 121 39.7
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.8e-12 79.0 79 58.2
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.4e-11 74.3 73 57.5
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.2e-10 72.0 112 42.0
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.1e-09 66.6 36 91.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.8 29 96.6


User provided reference genes

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