Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 6.4e-224 780.4 388 100.0
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.2e-163 579.3 356 81.5
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.3e-160 570.1 351 79.5
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 8.5e-160 567.4 353 78.5
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 7.2e-159 564.3 384 75.5
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 1.0e-157 560.5 353 77.9
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 1.8e-157 559.7 353 77.6
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 1.8e-157 559.7 353 77.9
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 3.0e-157 558.9 353 77.6
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 3.0e-157 558.9 353 77.6
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.7e-155 553.1 352 77.0
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 2.2e-155 552.7 351 78.6
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 3.7e-147 525.4 347 75.5
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 3.7e-147 525.4 347 75.5
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 1.8e-146 523.1 356 72.8
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 9.1e-146 520.8 349 74.5
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 9.1e-146 520.8 349 74.5
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 2.3e-144 516.2 347 74.4
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 3.8e-144 515.4 352 73.0
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 4.0e-141 505.4 331 72.8
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.0e-140 503.1 356 69.1
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 3.4e-140 502.3 331 72.2
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 5.7e-140 501.5 331 71.9
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 6.3e-139 498.0 342 69.6
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 8.3e-139 497.7 354 68.6
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 1.1e-138 497.3 340 69.1
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 1.8e-138 496.5 353 69.7
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.4e-138 496.1 331 71.6
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 3.5e-137 492.3 327 73.1
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 1.3e-136 490.3 332 71.7
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 8.6e-136 487.6 331 69.8
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 1.9e-135 486.5 348 68.4
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 3.3e-135 485.7 347 68.3
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 9.5e-135 484.2 384 62.2
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 1.4e-133 480.3 334 68.6
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 1.8e-133 479.9 360 64.7
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 2.3e-133 479.6 350 65.4
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 6.8e-133 478.0 373 63.8
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 8.9e-133 477.6 315 71.1
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 1.2e-132 477.2 349 65.0
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 1.5e-132 476.9 355 65.9
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 2.6e-132 476.1 340 65.6
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.9e-131 471.9 339 67.6
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 1.1e-130 470.7 329 69.0
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 1.9e-130 469.9 330 66.4
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 3.2e-130 469.2 340 66.8
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 1.2e-129 467.2 333 67.9
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 6.0e-129 464.9 343 62.7
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 1.0e-128 464.2 332 67.2
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 1.7e-128 463.4 354 63.6
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 6.6e-128 461.5 356 66.3
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 1.1e-127 460.7 334 65.6
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.5e-127 460.3 322 68.3
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 1.5e-127 460.3 337 65.9
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 1.5e-127 460.3 329 67.2
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 2.5e-127 459.5 337 65.6
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 4.3e-127 458.8 322 68.0
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 1.6e-126 456.8 351 63.2
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.6e-126 456.8 341 64.8
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 1.8e-125 453.4 322 67.1
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.8e-125 453.4 306 69.6
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 2.3e-125 453.0 297 71.4
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 2.3e-125 453.0 330 66.1
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 5.2e-125 451.8 331 65.6
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 5.2e-125 451.8 331 65.6
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 6.8e-125 451.4 321 67.3
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 6.8e-125 451.4 328 64.9
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 1.2e-124 450.7 328 66.2
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 2.0e-124 449.9 300 70.7
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 2.6e-124 449.5 328 64.6
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 7.5e-124 448.0 331 64.7
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 7.5e-124 448.0 323 68.4
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 7.5e-124 448.0 328 68.0
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 7.5e-124 448.0 330 65.5
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 3.7e-123 445.7 382 57.3
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 8.3e-123 444.5 316 67.4
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 1.4e-122 443.7 323 66.6
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 4.1e-122 442.2 306 69.0
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 7.0e-122 441.4 306 66.7
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 7.0e-122 441.4 333 65.5
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 1.6e-121 440.3 306 66.3
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 3.5e-121 439.1 344 62.2
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 5.1e-120 435.3 306 65.7
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 6.6e-120 434.9 332 63.0
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 8.6e-120 434.5 307 67.8
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 2.5e-119 433.0 334 63.2
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 2.5e-119 433.0 307 65.8
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 2.1e-118 429.9 311 65.3
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 3.6e-118 429.1 330 63.0
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 1.4e-117 427.2 392 54.6
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 2.3e-117 426.4 310 65.2
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 6.8e-117 424.9 310 63.2
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 2.0e-116 423.3 360 57.8
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 4.4e-116 422.2 364 60.2
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 3.7e-115 419.1 335 62.7
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 5.4e-114 415.2 359 59.1
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 7.1e-114 414.8 324 62.0
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 7.8e-113 411.4 349 58.2
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.0e-112 411.0 350 56.6
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 1.3e-112 410.6 305 61.6
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 2.3e-112 409.8 304 63.5
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 3.0e-112 409.5 348 58.0
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 5.6e-111 405.2 330 59.7
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 6.2e-110 401.7 287 65.5
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 8.1e-110 401.4 321 61.4
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 1.4e-109 400.6 309 61.2
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 4.0e-109 399.1 270 70.0
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 2.2e-107 393.3 397 53.4
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 3.8e-107 392.5 314 58.9
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.1e-106 391.0 321 60.1
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.9e-106 390.2 310 61.3
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 1.0e-104 384.4 353 57.8
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.1e-103 380.9 331 56.8
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.5e-103 380.6 301 60.1
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 1.6e-102 377.1 278 65.5
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.1e-101 374.4 302 57.6
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 2.0e-100 370.2 331 54.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.4e-100 369.4 330 55.5
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 1.6e-97 360.5 373 53.4
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.6e-97 359.0 280 61.4
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 8.7e-96 354.8 307 54.4
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 2.4e-90 336.7 416 44.5
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 3.2e-90 336.3 285 56.8
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 8.7e-88 328.2 417 46.0
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 8.1e-86 321.6 312 50.3
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 3.1e-85 319.7 215 68.4
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 2.9e-83 313.2 217 68.2
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.9e-82 310.5 217 65.4
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.5e-82 308.9 327 46.5
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.2e-81 307.8 316 49.1
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.2e-76 291.2 203 68.0
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.5e-76 290.8 207 67.1
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 1.6e-73 280.8 217 61.8
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.6e-65 253.1 314 46.5
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.6e-65 253.1 314 46.5
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 6.3e-62 242.3 295 46.1
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.4e-61 240.4 303 42.2
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 2.2e-59 233.8 232 54.7
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 3.0e-48 196.8 293 38.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 2.2e-46 190.7 295 35.3
RcHm_v2.0_Chr7g0228471 Rosa chinensis HOM05D003906 ORTHO05D004776 1.4e-45 188.0 125 72.0
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 7.0e-45 185.7 241 43.6
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 5.9e-44 182.6 241 42.3
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 2.7e-41 173.7 213 43.7
ClCG08G000300 Citrullus lanatus HOM05D003906 ORTHO05D004776 3.6e-41 173.3 123 68.3
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 1.0e-40 171.8 321 33.0
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 3.7e-38 163.3 274 36.5
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 9.1e-37 158.7 242 39.7
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 2.7e-36 157.1 144 59.7
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-35 154.1 264 35.6
Sed0013629 Sechium edule HOM05D003906 ORTHO05D004776 5.5e-34 149.4 261 36.0
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 2.1e-33 147.5 107 65.4
Nn3g18941 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.0e-32 145.2 115 58.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.2e-31 141.7 286 30.8
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 5.7e-31 139.4 126 54.0
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 5.4e-29 132.9 170 41.8
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 2.7e-28 130.6 193 37.3
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 3.8e-27 126.7 94 60.6
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 8.6e-27 125.6 261 29.9
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 7.2e-26 122.5 131 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 1.6e-25 121.3 174 37.4
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 8.9e-24 115.5 70 70.0
Cfa012929 Carpinus fangiana HOM05D003906 ORTHO05D004776 1.2e-23 115.2 79 68.4
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.2e-21 107.1 201 29.9
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 3.4e-15 87.0 196 31.6
SEGI_20889 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 9.2e-13 79.0 79 44.3
Gohir.A13G059533 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.4e-07 60.5 41 68.3
Gohir.D10G179233 Gossypium hirsutum HOM05D003906 ORTHO05D029892 3.4e-07 60.5 41 68.3
Gohir.D13G134850 Gossypium hirsutum HOM05D003906 ORTHO05D029892 3.4e-07 60.5 41 68.3
Gorai.006G003400 Gossypium raimondii HOM05D003906 ORTHO05D029892 3.4e-07 60.5 41 68.3
Gorai.009G423600 Gossypium raimondii HOM05D003906 ORTHO05D029892 1.3e-06 58.5 41 65.9


User provided reference genes

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