Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027230 Cardamine hirsuta HOM05D002450 ORTHO05D002953 5.5e-223 777.3 391 100.0
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 9.7e-71 271.6 437 44.2
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 1.4e-64 251.1 444 42.6
AT1G27720 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 4.0e-64 249.6 252 58.7
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 5.2e-64 249.2 422 42.7
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 2.0e-63 247.3 421 42.8
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 1.3e-62 244.6 415 43.4
Carub.0001s2623 Capsella rubella HOM05D002450 ORTHO05D002953 1.1e-61 241.5 280 53.2
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 3.1e-61 240.0 419 42.0
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 2.0e-60 237.3 411 42.8
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 2.0e-60 237.3 421 42.8
AL1G41250 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 3.5e-60 236.5 257 55.6
BcaB03g13972 Brassica carinata HOM05D002450 ORTHO05D002953 9.8e-55 218.4 423 38.3
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 5.0e-51 206.1 419 38.9
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 1.5e-50 204.5 408 40.9
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 1.5e-50 204.5 408 40.9
BolC7t42261H Brassica oleracea HOM05D002450 ORTHO05D002953 1.9e-50 204.1 424 37.3
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 3.3e-50 203.4 438 39.7
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 7.3e-50 202.2 422 38.9
A07p11620 Brassica napus HOM05D002450 ORTHO05D002953 5.2e-48 196.1 391 37.1
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 2.2e-46 190.7 423 39.5
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 6.4e-46 189.1 415 39.5
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 8.3e-46 188.7 423 39.2
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 8.3e-46 188.7 423 39.2
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 1.8e-45 187.6 402 38.8
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 2.0e-44 184.1 415 39.0
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 1.7e-43 181.0 406 38.4
C07p17530 Brassica napus HOM05D002450 ORTHO05D002953 3.4e-39 166.8 459 33.1
BcaC06g35313 Brassica carinata HOM05D002450 ORTHO05D002953 2.2e-38 164.1 459 33.3
BraA07t28949Z Brassica rapa HOM05D002450 ORTHO05D002953 3.9e-35 153.3 441 31.7
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 8.3e-30 135.6 511 29.9
Thhalv10009915m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 3.2e-29 133.7 378 32.5
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 9.2e-29 132.1 507 29.2
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 2.5e-26 124.0 499 30.1
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 5.6e-26 122.9 494 29.4
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 3.6e-25 120.2 492 28.9
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 4.7e-25 119.8 428 29.7
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 6.8e-24 115.9 494 27.7
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 8.9e-24 115.5 528 28.0
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 1.2e-23 115.2 517 28.4
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.5e-23 114.8 484 28.5
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 2.6e-23 114.0 500 27.4
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 1.7e-22 111.3 486 28.2
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 2.2e-22 110.9 459 28.5
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 2.9e-22 110.5 505 27.1
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 2.9e-22 110.5 502 26.7
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 4.9e-22 109.8 440 28.2
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 1.4e-21 108.2 474 28.5
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 5.4e-21 106.3 491 28.3
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 9.2e-21 105.5 485 27.6
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 1.2e-20 105.1 411 28.0
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 1.2e-20 105.1 485 27.4
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 1.2e-20 105.1 273 32.6
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 4.6e-20 103.2 490 26.7
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 7.8e-20 102.4 496 27.2
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 7.8e-20 102.4 489 26.4
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 1.0e-19 102.1 496 26.0
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 1.0e-19 102.1 487 26.1
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 3.0e-19 100.5 492 25.4
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.9e-19 100.1 492 26.2
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 8.6e-19 99.0 491 27.9
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 1.1e-18 98.6 480 27.3
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 1.1e-18 98.6 495 26.1
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 1.5e-18 98.2 451 26.8
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 1.5e-18 98.2 502 26.3
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 1.9e-18 97.8 494 26.5
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.3e-18 97.1 492 26.0
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 4.3e-18 96.7 472 29.2
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 7.3e-18 95.9 446 28.5
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 9.6e-18 95.5 258 32.9
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.6e-17 94.7 459 27.2
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.8e-17 94.0 471 26.5
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.6e-17 93.6 492 25.0
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 4.7e-17 93.2 500 26.8
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 4.7e-17 93.2 468 27.1
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 4.7e-17 93.2 253 31.6
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 4.7e-17 93.2 488 25.6
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 6.2e-17 92.8 477 24.3
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.4e-16 91.7 488 26.8
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 1.4e-16 91.7 558 25.8
Sp1g23950 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.4e-16 91.7 141 48.9
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 3.1e-16 90.5 481 26.8
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 4.0e-16 90.1 308 29.5
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 5.2e-16 89.7 493 26.4
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 5.2e-16 89.7 184 32.6
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 6.9e-16 89.4 473 27.7
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 8.9e-16 89.0 486 24.1
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 1.5e-15 88.2 492 25.6
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 2.6e-15 87.4 478 25.9
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 3.4e-15 87.0 463 26.3
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 5.8e-15 86.3 481 25.8
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 2.9e-14 84.0 331 29.3
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 2.9e-14 84.0 448 25.9
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 4.9e-14 83.2 432 26.4
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.9e-14 83.2 467 26.8
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 1.1e-13 82.0 461 26.7
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.9e-13 81.3 489 23.9
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 2.4e-13 80.9 442 25.6
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 2.4e-13 80.9 461 26.5
THA.LOC104804740 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 2.4e-13 80.9 260 33.5
THA.LOC104814186 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 2.4e-13 80.9 260 33.5
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 4.2e-13 80.1 463 26.6
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 5.4e-13 79.7 471 25.5
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 7.1e-13 79.3 358 28.2
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 9.3e-13 79.0 421 26.8
Nitab4.5_0000197g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 9.3e-13 79.0 483 24.2
PGSC0003DMG401021510 Solanum tuberosum HOM05D002450 ORTHO05D002953 9.3e-13 79.0 459 26.4
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 1.6e-12 78.2 479 27.1
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 2.7e-12 77.4 468 25.6
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 3.5e-12 77.0 264 28.4
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 4.6e-12 76.6 485 26.0
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 7.8e-12 75.9 519 24.5
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 1.0e-11 75.5 473 25.2
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 1.7e-11 74.7 425 24.9
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 3.9e-11 73.6 468 25.2
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 6.6e-11 72.8 461 23.9
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 8.7e-11 72.4 532 24.1
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 1.1e-10 72.0 485 25.2
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 4.3e-10 70.1 479 23.4
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 4.3e-10 70.1 496 24.2
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.3e-09 68.6 348 29.3
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 1.3e-09 68.6 452 25.0
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 4.8e-09 66.6 396 23.5
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 6.2e-09 66.2 427 25.5
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 8.1e-09 65.9 280 26.1
Oeu012055.1 Olea europaea HOM05D002450 ORTHO05D002953 8.1e-09 65.9 179 29.1
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 1.1e-08 65.5 487 23.2
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 1.1e-08 65.5 356 25.0
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 1.4e-08 65.1 359 25.6
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.1e-08 63.9 287 27.5
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 5.3e-08 63.2 286 28.0
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 5.3e-08 63.2 335 26.0
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.5e-07 61.6 533 22.5
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 2.6e-07 60.8 342 26.3
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 4.5e-07 60.1 449 24.5
Atru.chr9.2194 Acer truncatum HOM05D002450 ORTHO05D002953 5.8e-07 59.7 258 30.2
MD03G1150900 Malus domestica HOM05D002450 ORTHO05D002953 7.6e-07 59.3 163 30.1
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.3e-06 58.5 547 20.8
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 8.4e-06 55.8 503 23.9
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 8.4e-06 55.8 468 23.5


User provided reference genes

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