Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1623.6 805 100.0
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1448.7 813 87.8
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1446.4 813 87.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1444.5 813 87.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1404.0 814 85.1
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1396.3 812 85.0
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1323.5 814 81.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1318.1 807 82.2
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1314.3 807 81.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1312.0 808 81.4
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1310.4 808 81.3
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1308.1 808 81.1
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1286.6 814 79.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1283.1 805 80.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1268.8 802 79.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1265.0 801 79.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1259.6 806 78.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1255.4 800 79.4
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1225.3 819 75.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1216.1 818 73.7
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1209.5 822 72.7
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1203.7 820 73.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1203.0 818 73.0
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1200.7 818 73.3
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1190.3 816 72.7
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1188.3 821 72.7
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1182.5 816 72.5
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1177.2 816 71.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1177.2 816 71.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1169.1 814 71.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1167.9 816 71.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1166.8 816 71.4
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1129.0 828 69.2
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1099.7 817 68.3
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1081.6 825 65.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 3.9e-292 1008.1 825 62.5
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.7e-291 1004.2 829 61.8
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 5.3e-289 997.7 826 62.8
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 3.8e-287 991.5 833 61.3
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 6.5e-287 990.7 825 61.8
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 8.5e-287 990.3 829 62.5
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.4e-286 989.6 831 61.6
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.4e-286 989.6 831 61.1
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.2e-286 988.4 831 61.0
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.2e-286 988.0 831 60.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 5.5e-286 987.6 832 60.7
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 9.3e-286 986.9 832 62.0
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.1e-285 985.7 832 61.2
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 6.1e-285 984.2 845 61.2
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.0e-284 983.4 828 60.6
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 1.8e-284 982.6 831 61.9
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.5e-283 979.5 828 61.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 3.7e-282 974.9 830 61.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.1e-281 973.4 867 58.6
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.4e-280 968.4 823 60.6
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.0e-279 966.8 827 61.5
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.8e-279 964.9 822 61.7
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 6.5e-279 964.1 826 60.9
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 3.2e-278 961.8 827 58.3
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.7e-277 958.7 836 59.4
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.7e-277 958.7 827 59.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 4.6e-277 958.0 827 60.9
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 7.4e-275 950.7 824 59.1
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.3e-274 949.9 838 58.2
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 5.3e-273 944.5 831 58.2
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 9.1e-273 943.7 837 58.1
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.0e-272 942.6 822 59.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.6e-272 942.2 831 58.5
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.9e-272 941.0 828 57.6
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 6.5e-271 937.6 828 58.2
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.1e-270 936.8 821 58.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 4.2e-270 934.9 837 57.9
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.1e-269 932.6 833 57.4
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 4.7e-269 931.4 835 57.6
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 7.9e-269 930.6 832 57.7
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.4e-268 929.9 819 57.9
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.3e-268 929.1 812 58.5
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.9e-268 928.3 825 57.5
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.7e-268 927.5 828 56.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 3.7e-266 921.8 824 56.9
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.7e-266 921.8 841 56.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 6.3e-266 921.0 832 57.0
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.2e-266 920.6 840 57.4
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 2.6e-264 915.6 876 54.8
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 5.9e-264 914.4 814 58.0
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 7.7e-264 914.1 828 56.9
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.7e-263 912.9 828 56.3
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 1.7e-263 912.9 799 57.9
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 6.5e-263 911.0 867 55.1
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 8.5e-263 910.6 825 56.7
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.2e-261 906.7 829 54.9
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 2.3e-260 902.5 836 56.5
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.0e-260 902.1 813 55.7
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 3.0e-260 902.1 826 56.3
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.2e-259 900.2 836 56.6
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.5e-259 899.8 818 57.0
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.5e-259 899.8 836 56.6
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.5e-259 899.8 836 56.5
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 3.3e-259 898.7 818 56.0
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.4e-259 898.3 836 56.5
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 4.4e-259 898.3 830 56.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 7.5e-259 897.5 820 56.5
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.8e-258 895.6 864 54.9
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 3.7e-258 895.2 716 62.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.8e-257 892.9 832 55.4
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.8e-257 892.9 817 57.5
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 9.1e-257 890.6 824 56.3
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.2e-256 890.2 836 55.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.0e-255 887.1 833 55.7
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 3.8e-255 885.2 820 55.9
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.9e-254 882.9 819 54.9
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.9e-254 882.9 830 56.4
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-253 879.0 702 63.5
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 4.0e-252 875.2 795 57.2
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 2.0e-251 872.8 819 55.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.3e-250 870.2 836 55.4
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 2.2e-250 869.4 751 59.3
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 8.3e-250 867.5 826 56.7
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 2.9e-247 859.0 764 59.0
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 2.5e-246 855.9 725 59.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.0e-243 846.3 834 54.0
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.2e-242 842.8 821 54.4
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.1e-241 840.5 832 53.2
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 9.2e-241 837.4 732 59.3
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 7.8e-240 834.3 824 54.6
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 8.6e-239 830.9 867 52.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 7.3e-238 827.8 816 53.4
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 5.7e-235 818.1 766 54.6
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 5.6e-230 801.6 716 56.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 6.8e-228 794.7 820 52.6
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 7.5e-227 791.2 824 51.1
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 2.2e-226 789.6 835 52.3
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.1e-225 787.3 818 50.2
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.4e-225 786.9 833 51.1
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.9e-223 778.9 636 62.1
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 8.6e-223 777.7 824 50.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.9e-222 776.5 829 50.3
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.6e-221 772.3 824 51.2
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 5.6e-214 748.4 835 50.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 2.0e-211 740.0 818 49.3
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 5.8e-211 738.4 812 50.7
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.7e-210 736.9 695 55.3
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 2.3e-167 593.6 582 56.0
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.1e-166 591.3 704 48.2
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.1e-158 564.7 899 38.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.4e-155 553.1 910 37.5
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.3e-150 536.6 849 37.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.8e-143 511.9 920 35.8
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.2e-139 501.5 429 58.3
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.3e-130 471.5 406 60.6
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 7.0e-124 449.1 905 33.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 1.1e-116 425.2 450 52.4
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 8.9e-111 405.6 624 38.1
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 4.6e-107 393.3 320 64.1
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 9.9e-102 375.6 508 41.5
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.0e-95 353.6 294 62.6
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.4e-79 302.0 311 50.8
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.9e-77 294.3 258 59.3
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-76 292.0 698 32.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 6.0e-75 286.6 256 55.9
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 3.7e-64 250.8 226 54.9
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.9e-61 241.1 156 73.7
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.0e-58 231.1 266 45.5
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 6.7e-58 229.9 930 23.8
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 2.2e-56 224.9 265 51.3
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.3e-45 189.1 119 77.3
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.1e-44 186.0 898 23.6
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 3.9e-42 177.6 205 50.7
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 5.9e-38 163.7 197 46.7
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.5e-37 159.8 193 46.1
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.9e-36 158.7 542 26.0
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.8e-34 152.1 202 44.6
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.0e-31 140.2 102 63.7
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.5e-30 137.9 100 67.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.4e-26 125.9 99 62.6
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.6e-25 121.7 369 27.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 1.9e-20 105.5 96 57.3
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.3e-16 92.8 110 46.4
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.0e-15 87.0 110 39.1
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-14 86.3 110 40.0
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-14 86.3 110 38.2
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-14 85.1 110 39.1
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.9e-13 81.6 70 50.0
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 8.9e-10 70.1 114 43.0
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 4.1e-07 61.2 42 59.5


User provided reference genes

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