Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 4.3e-136 488.0 252 100.0
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.3e-124 449.9 252 92.5
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 3.0e-121 438.7 252 89.3
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 8.6e-121 437.2 252 90.5
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 1.1e-118 430.3 252 88.1
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 9.9e-117 423.7 252 88.5
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 9.3e-107 390.6 259 79.2
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 6.2e-103 377.9 247 79.4
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 8.1e-103 377.5 247 79.8
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.2e-98 363.6 238 81.5
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.2e-98 363.6 238 81.5
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 1.9e-96 356.3 242 79.8
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 2.5e-96 355.9 239 79.9
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 5.6e-96 354.8 230 77.8
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 9.0e-86 320.9 236 66.5
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 1.2e-85 320.5 240 65.0
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 2.9e-84 315.8 235 67.2
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 3.8e-84 315.5 252 63.5
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 8.4e-84 314.3 223 68.2
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 8.4e-84 314.3 252 64.3
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 1.4e-83 313.5 252 61.9
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 1.2e-82 310.5 250 62.0
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 7.9e-82 307.8 238 64.7
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.8e-81 306.6 252 61.9
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 3.0e-81 305.8 249 63.5
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 3.9e-81 305.4 261 62.1
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 3.9e-81 305.4 249 63.5
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 5.1e-81 305.1 252 61.5
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 5.1e-81 305.1 227 66.5
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 6.7e-81 304.7 224 66.1
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 6.7e-81 304.7 245 62.9
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 6.7e-81 304.7 232 67.2
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 8.7e-81 304.3 221 67.0
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 8.7e-81 304.3 221 67.0
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 3.3e-80 302.4 252 61.5
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 7.4e-80 301.2 224 66.5
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 7.4e-80 301.2 224 66.5
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 9.7e-80 300.8 221 66.5
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 9.7e-80 300.8 251 61.8
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-79 300.4 224 66.1
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.3e-79 300.4 226 65.0
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 1.3e-79 300.4 225 65.3
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 2.2e-79 299.7 251 61.8
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 3.7e-79 298.9 226 64.6
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 3.7e-79 298.9 225 65.3
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 6.3e-79 298.1 239 60.7
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 6.3e-79 298.1 243 59.7
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 6.3e-79 298.1 251 61.4
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 8.2e-79 297.7 225 64.0
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 8.2e-79 297.7 224 63.8
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 1.4e-78 297.0 224 64.3
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 1.4e-78 297.0 242 61.2
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 1.8e-78 296.6 230 62.2
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.8e-78 296.6 221 65.2
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 3.1e-78 295.8 230 61.7
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 4.1e-78 295.4 225 65.3
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 4.1e-78 295.4 226 63.3
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 6.9e-78 294.7 225 66.2
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 6.9e-78 294.7 224 63.8
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 1.5e-77 293.5 229 63.8
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 5.9e-77 291.6 240 60.4
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 7.7e-77 291.2 230 62.2
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 5.0e-76 288.5 252 58.3
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 2.5e-75 286.2 225 64.9
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 3.2e-75 285.8 229 62.0
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 3.2e-75 285.8 252 57.9
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 4.2e-75 285.4 223 63.2
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 9.4e-75 284.3 229 62.0
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 9.4e-75 284.3 229 60.7
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 1.8e-73 280.0 221 62.9
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 5.1e-73 278.5 237 62.0
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 2.5e-72 276.2 235 60.0
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 9.7e-72 274.2 227 62.1
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 4.8e-71 271.9 229 59.4
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.1e-70 270.8 235 59.6
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.8e-70 270.0 227 59.0
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 6.9e-70 268.1 228 61.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 1.2e-69 267.3 226 56.6
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 2.6e-69 266.2 224 57.1
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 7.7e-69 264.6 218 60.6
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 7.7e-69 264.6 224 58.5
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.0e-68 264.2 288 51.0
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 3.8e-68 262.3 224 57.6
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 5.0e-68 261.9 254 54.7
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.4e-67 260.4 211 62.1
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.9e-67 260.0 259 54.4
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 5.5e-67 258.5 221 58.8
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.6e-66 256.9 238 56.7
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.5e-64 250.4 247 55.1
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 1.3e-63 247.3 224 57.1
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 8.2e-63 244.6 221 57.9
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 4.1e-62 242.3 180 65.6
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 8.5e-60 234.6 213 57.7
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.1e-59 234.2 177 61.6
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 2.7e-58 229.6 189 59.3
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 8.8e-57 224.6 281 50.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 4.4e-56 222.2 210 58.1
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 5.7e-56 221.9 211 57.8
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 5.7e-56 221.9 260 48.8
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 9.1e-54 214.5 198 55.6
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.0e-53 213.4 232 51.7
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 6.5e-52 208.4 182 57.1
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.5e-51 207.2 174 59.8
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 5.2e-49 198.7 132 81.8
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 8.8e-49 198.0 159 64.8
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-47 194.1 220 50.0
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 4.8e-47 192.2 155 59.4
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 8.3e-47 191.4 224 49.1
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 4.5e-45 185.7 132 66.7
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 2.1e-42 176.8 162 61.1
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 1.1e-38 164.5 176 51.7
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 2.7e-37 159.8 123 64.2
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 1.7e-36 157.1 124 63.7
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 5.0e-36 155.6 121 62.0
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 2.1e-34 150.2 152 54.6
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 1.2e-32 144.4 218 37.2
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.7e-29 133.3 221 34.4
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 5.6e-19 99.0 80 58.8
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 9.5e-19 98.2 114 46.5
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-15 87.8 65 63.1
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 1.2e-10 71.2 86 48.8
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 1.1e-06 58.2 43 62.8


User provided reference genes

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