Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR008500 Cardamine hirsuta HOM05D000104 ORTHO05D006397 1.2e-179 633.3 383 100.0
AL1G19030 Arabidopsis lyrata HOM05D000104 ORTHO05D006397 1.2e-108 397.5 255 81.6
AT1G08600 Arabidopsis thaliana HOM05D000104 ORTHO05D006397 9.8e-108 394.4 252 82.1
Sp1g07260 Schrenkiella parvula HOM05D000104 ORTHO05D006397 2.8e-107 392.9 257 80.2
BcaB07g34102 Brassica carinata HOM05D000104 ORTHO05D006397 3.7e-107 392.5 257 80.2
C05p06690 Brassica napus HOM05D000104 ORTHO05D006397 3.7e-107 392.5 257 80.2
BolC5t29429H Brassica oleracea HOM05D000104 ORTHO05D006397 3.1e-106 389.4 257 79.8
Thhalv10006555m.g Eutrema salsugineum HOM05D000104 ORTHO05D006397 7.0e-106 388.3 257 79.8
Aa31sc449G60 Aethionema arabicum HOM05D000104 ORTHO05D006397 1.2e-105 387.5 311 68.5
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 2.0e-105 386.7 257 79.4
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 4.5e-105 385.6 257 79.0
BolC8t52520H Brassica oleracea HOM05D000104 ORTHO05D006397 1.5e-100 370.5 277 71.8
Carub.0001s0796 Capsella rubella HOM05D000104 ORTHO05D006397 4.5e-97 359.0 228 80.7
THA.LOC104805785 Tarenaya hassleriana HOM05D000104 ORTHO05D006397 1.5e-95 354.0 257 72.4
C08p49920 Brassica napus HOM05D000104 ORTHO05D006397 2.3e-93 346.7 259 71.4
BraA09t41927Z Brassica rapa HOM05D000104 ORTHO05D006397 2.2e-91 340.1 259 71.0
A09p65830 Brassica napus HOM05D000104 ORTHO05D006397 9.2e-90 334.7 259 70.7
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 4.4e-84 315.8 258 64.0
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 7.5e-84 315.1 258 64.3
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 8.3e-83 311.6 260 63.5
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 2.4e-82 310.1 252 63.1
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 3.2e-82 309.7 252 63.1
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 4.1e-82 309.3 259 64.5
Ciclev10030509m.g Citrus clementina HOM05D000104 ORTHO05D006397 7.0e-82 308.5 249 63.5
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 2.0e-81 307.0 252 63.5
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 3.5e-81 306.2 252 63.1
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 6.0e-81 305.4 258 61.2
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 7.8e-81 305.1 264 61.7
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 1.3e-80 304.3 254 64.2
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 1.3e-80 304.3 259 60.6
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 1.7e-80 303.9 258 62.8
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.3e-80 303.5 254 64.2
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 2.3e-80 303.5 258 60.5
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 6.6e-80 302.0 258 62.0
CANSAT54G2768 Cannabis sativa HOM05D000104 ORTHO05D006397 1.1e-79 301.2 260 62.3
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 1.5e-79 300.8 255 60.4
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.9e-79 300.4 242 63.6
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 1.9e-79 300.4 244 63.5
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 9.5e-79 298.1 257 62.3
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 1.6e-78 297.4 257 62.3
CsaV3_2G009970 Cucumis sativus L. HOM05D000104 ORTHO05D006397 2.8e-78 296.6 262 60.7
VMungo0720G2029 Vigna mungo HOM05D000104 ORTHO05D006397 2.8e-78 296.6 258 61.2
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 4.7e-78 295.8 268 60.8
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 4.7e-78 295.8 236 65.3
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 6.2e-78 295.4 258 61.2
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 1.1e-77 294.7 260 62.7
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 3.1e-77 293.1 260 61.5
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 4.0e-77 292.7 259 58.7
MELO3C008639.2 Cucumis melo HOM05D000104 ORTHO05D006397 6.8e-77 292.0 268 59.7
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-76 291.2 257 62.3
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-76 291.2 257 62.3
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 2.0e-76 290.4 258 59.3
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.0e-76 290.4 257 62.3
Sed0014493 Sechium edule HOM05D000104 ORTHO05D006397 2.0e-76 290.4 269 59.9
Atru.chr2.1068 Acer truncatum HOM05D000104 ORTHO05D006397 2.6e-76 290.0 258 58.5
Sabra13G0044700 Salix brachista HOM05D000104 ORTHO05D006397 2.6e-76 290.0 256 60.9
Nn1g02987 Nelumbo nucifera HOM05D000104 ORTHO05D006397 3.4e-76 289.7 259 58.3
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 4.4e-76 289.3 258 58.5
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 4.4e-76 289.3 258 60.1
CDE02G4509 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 5.8e-76 288.9 260 59.2
ClCG11G010390 Citrullus lanatus HOM05D000104 ORTHO05D006397 5.8e-76 288.9 237 64.1
BcaC07g41936 Brassica carinata HOM05D000104 ORTHO05D006397 9.8e-76 288.1 222 70.7
TPR.G26620 Trifolium pratense HOM05D000104 ORTHO05D006397 1.7e-75 287.3 254 60.6
EL10Ac4g09754 Beta vulgaris HOM05D000104 ORTHO05D006397 4.9e-75 285.8 253 60.5
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 4.9e-75 285.8 258 59.3
Medtr1g080420 Medicago truncatula HOM05D000104 ORTHO05D006397 1.4e-74 284.3 260 59.6
Ah.02g118350 Amaranthus hybridus HOM05D000104 ORTHO05D006397 1.9e-74 283.9 250 60.8
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 1.9e-74 283.9 257 59.5
Ca_10025_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006397 2.4e-74 283.5 260 58.5
Psat6g144360 Pisum sativum HOM05D000104 ORTHO05D006397 2.4e-74 283.5 257 59.9
Lj5g0000218 Lotus japonicus HOM05D000104 ORTHO05D006397 7.1e-74 282.0 257 56.4
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 1.6e-73 280.8 258 58.1
Sopen04g020860 Solanum pennellii HOM05D000104 ORTHO05D006397 3.5e-73 279.6 235 61.3
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 1.3e-72 277.7 257 58.0
ECA238G2794 Erigeron canadensis HOM05D000104 ORTHO05D006397 3.0e-72 276.6 257 56.8
Lsat_1_v5_gn_2_15881 Lactuca sativa HOM05D000104 ORTHO05D006397 6.6e-72 275.4 257 57.6
Solyc04g050160.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 6.6e-72 275.4 234 60.7
Rhsim09G0133300 Rhododendron simsii HOM05D000104 ORTHO05D006397 8.6e-72 275.0 230 59.6
ATR0787G043 Amborella trichopoda HOM05D000104 ORTHO05D006397 4.3e-71 272.7 260 55.0
vmacro10381 Vaccinium macrocarpon HOM05D000104 ORTHO05D006397 7.3e-71 271.9 265 54.3
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 2.1e-70 270.4 233 60.1
MSTRG.27435 Avicennia marina HOM05D000104 ORTHO05D006397 3.6e-70 269.6 260 56.9
DCAR_028378 Daucus carota HOM05D000104 ORTHO05D006397 3.6e-70 269.6 232 59.9
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 8.1e-70 268.5 233 58.8
HPP92_015192 Vanilla planifolia HOM05D000104 ORTHO05D006397 1.8e-69 267.3 260 56.2
unitig_37.g12285 Utricularia gibba HOM05D000104 ORTHO05D006397 2.0e-68 263.8 226 60.6
Lj2A45G39 Lonicera japonica HOM05D000104 ORTHO05D006397 4.4e-68 262.7 227 59.9
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 9.9e-68 261.5 276 51.8
PSO764G0152 Papaver somniferum HOM05D000104 ORTHO05D006397 1.3e-67 261.2 259 56.0
Aqoxy5G00143 Aquilegia oxysepala HOM05D000104 ORTHO05D006397 4.9e-67 259.2 259 52.5
AUR62006982 Chenopodium quinoa HOM05D000104 ORTHO05D006397 3.2e-66 256.5 257 56.0
Os10g0457700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006397 2.1e-65 253.8 249 54.6
SGA_v2.0_scaffold62G21465 Striga asiatica HOM05D000104 ORTHO05D006397 7.8e-65 251.9 215 61.4
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 1.0e-64 251.5 235 57.0
Haze_04401 Corylus avellana HOM05D000104 ORTHO05D006397 1.3e-64 251.1 228 60.1
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 1.8e-61 240.7 259 52.9
Peaxi162Scf00373g01416 Petunia axillaris HOM05D000104 ORTHO05D006397 1.5e-60 237.7 226 56.2
Hund07179 Selenicereus undatus HOM05D000104 ORTHO05D006397 1.5e-60 237.7 196 60.2
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 2.2e-59 233.8 213 58.2
Migut.F01812 Erythranthe guttata HOM05D000104 ORTHO05D006397 2.4e-58 230.3 211 56.4
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 4.3e-55 219.5 171 64.3
SEGI_02699 Sequoiadendron giganteum HOM05D000104 ORTHO05D006397 4.3e-55 219.5 259 50.2
CAN.G29.15 Capsicum annuum HOM05D000104 ORTHO05D006397 5.8e-52 209.1 243 48.6
Zm00001eb046650 Zea mays HOM05D000104 ORTHO05D006397 5.8e-52 209.1 262 45.8
Cpa.g.sc51.11 Carica papaya HOM05D000104 ORTHO05D006397 6.4e-51 205.7 151 66.2
SHI15632 Sapria himalayana HOM05D000104 ORTHO05D006397 5.1e-48 196.1 250 46.0
SMO115G0122 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 1.5e-47 194.5 250 45.2
Actinidia38931 Actinidia chinensis HOM05D000104 ORTHO05D006397 2.1e-46 190.7 147 59.2
CDE09G0961 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 9.3e-42 175.3 147 64.6
Mapoly0058s0081 Marchantia polymorpha HOM05D000104 ORTHO05D006397 1.0e-40 171.8 237 43.5
Pp3c14_22150 Physcomitrium patens HOM05D000104 ORTHO05D006397 1.0e-40 171.8 256 41.4
SMO340G0266 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 3.4e-36 156.8 227 40.5
SMO240G0025 Selaginella moellendorffii HOM05D059233 ORTHO05D006397 9.3e-34 148.7 214 42.1
AagrBONN_evm.TU.Sc2ySwM_344.2543 Anthoceros agrestis HOM05D000104 ORTHO05D006397 7.9e-33 145.6 255 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1355 Anthoceros agrestis HOM05D000104 ORTHO05D006397 9.6e-31 138.7 269 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1354 Anthoceros agrestis HOM05D002647 ORTHO05D002935 1.2e-28 131.7 230 38.7
CBR_g50040 Chara braunii HOM05D000104 ORTHO05D006397 1.1e-26 125.2 223 38.1
SalBow4G2470 Salvia bowleyana HOM05D017717 ORTHO05D006397 7.2e-10 69.3 58 56.9
Lsat_1_v5_gn_2_50481 Lactuca sativa HOM05D000894 ORTHO05D002325 2.0e-07 61.2 51 54.9


User provided reference genes

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