Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.2e-91 339.0 171 100.0
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 6.8e-69 264.2 159 82.4
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.2e-67 259.2 159 82.4
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 1.1e-66 256.9 159 78.0
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 3.5e-65 251.9 157 78.3
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.3e-64 250.0 159 78.6
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 2.1e-62 242.7 169 71.0
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 3.6e-62 241.9 159 74.8
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 1.8e-61 239.6 159 74.2
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 1.8e-61 239.6 159 74.2
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 1.5e-60 236.5 159 72.3
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 2.1e-57 226.1 173 66.5
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 8.6e-56 220.7 159 69.2
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.3e-55 218.8 158 68.4
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.4e-53 213.4 156 66.7
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 6.2e-46 188.0 157 61.8
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 8.9e-45 184.1 167 58.1
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 1.2e-44 183.7 156 60.9
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 5.8e-44 181.4 160 57.5
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 9.9e-44 180.6 155 57.4
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.7e-43 179.9 156 59.0
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 8.4e-43 177.6 157 58.6
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 3.2e-42 175.6 156 56.4
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 5.4e-42 174.9 153 56.9
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 7.1e-42 174.5 152 55.9
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 9.3e-42 174.1 161 57.1
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 9.3e-42 174.1 162 51.9
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.6e-41 173.3 157 56.7
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.6e-41 173.3 160 55.0
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.1e-41 172.9 155 54.2
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.1e-41 172.9 155 54.8
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 2.7e-41 172.6 154 51.3
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 3.5e-41 172.2 152 53.9
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 6.0e-41 171.4 152 53.3
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 7.8e-41 171.0 157 54.1
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 1.0e-40 170.6 157 55.4
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.3e-40 169.5 155 53.5
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 2.3e-40 169.5 155 53.5
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.0e-40 169.1 152 54.6
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 3.9e-40 168.7 153 53.6
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.1e-40 168.3 155 53.5
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 5.1e-40 168.3 152 53.3
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 6.6e-40 167.9 153 54.9
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 6.6e-40 167.9 157 55.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 8.7e-40 167.5 153 54.2
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 8.7e-40 167.5 152 55.3
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 8.7e-40 167.5 156 53.2
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 8.7e-40 167.5 156 54.5
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 1.1e-39 167.2 155 52.9
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.9e-39 166.4 149 55.7
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 2.5e-39 166.0 158 51.3
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 2.5e-39 166.0 155 52.9
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 2.5e-39 166.0 155 52.9
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 3.3e-39 165.6 154 53.2
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 4.3e-39 165.2 151 55.0
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 5.6e-39 164.9 156 55.1
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 7.3e-39 164.5 151 52.3
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 4.8e-38 161.8 152 52.6
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 4.8e-38 161.8 152 52.6
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 1.1e-37 160.6 157 52.2
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.8e-37 159.8 152 52.0
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.8e-37 159.8 151 54.3
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 1.8e-37 159.8 157 50.3
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 4.0e-37 158.7 163 50.3
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 6.9e-37 157.9 160 51.9
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 6.9e-37 157.9 155 51.6
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.2e-36 157.1 155 51.0
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.5e-36 156.8 154 51.3
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 2.0e-36 156.4 149 53.7
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 2.0e-36 156.4 155 50.3
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 3.4e-36 155.6 162 49.4
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 4.4e-36 155.2 153 54.2
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 4.4e-36 155.2 157 47.8
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 4.4e-36 155.2 159 47.8
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 5.8e-36 154.8 159 48.4
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 9.9e-36 154.1 163 51.5
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 2.9e-35 152.5 156 51.9
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 2.9e-35 152.5 147 49.7
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 4.9e-35 151.8 155 49.0
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 2.4e-34 149.4 152 45.4
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 5.4e-34 148.3 160 50.0
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 7.1e-34 147.9 150 50.0
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 9.3e-34 147.5 152 48.7
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.6e-33 146.7 152 47.4
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 2.7e-33 146.0 155 48.4
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 4.6e-33 145.2 119 56.3
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 8.7e-32 141.0 171 42.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.3e-31 138.7 152 48.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 7.3e-31 137.9 160 43.1
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 1.6e-30 136.7 161 44.7
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 1.6e-30 136.7 157 49.0
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.6e-30 136.7 151 47.0
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 6.2e-30 134.8 160 43.1
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.1e-29 134.0 141 48.2
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 9.0e-29 131.0 159 48.4
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 2.0e-28 129.8 150 42.7
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 2.9e-27 125.9 158 43.7
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.9e-27 125.9 149 44.3
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.4e-26 123.6 155 41.9
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.4e-26 122.9 152 43.4
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 1.2e-25 120.6 126 50.0
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.8e-24 116.7 173 39.3
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 3.0e-24 115.9 169 39.6
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 1.5e-23 113.6 151 47.0
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 2.5e-23 112.8 144 35.4
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 4.3e-23 112.1 104 50.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.7e-22 109.0 156 41.7
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 6.2e-22 108.2 149 36.9
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 4.2e-18 95.5 158 36.7
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 5.5e-18 95.1 151 33.1
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 3.7e-14 82.4 121 42.1
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 5.0e-11 72.0 54 55.6
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 4.2e-10 68.9 111 30.6
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 5.5e-10 68.6 100 34.0
Duzib168G0477 Durio zibethinus HOM05D002728 ORTHO05D002874 8.7e-08 61.2 161 26.1
MD15G1109200 Malus domestica HOM05D002728 ORTHO05D002874 1.5e-07 60.5 168 26.2
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 1.9e-07 60.1 160 26.2
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 2.5e-07 59.7 177 27.1
Gorai.013G212100 Gossypium raimondii HOM05D002728 ORTHO05D002874 4.3e-07 58.9 163 25.2
Gohir.D13G186100 Gossypium hirsutum HOM05D002728 ORTHO05D002874 7.4e-07 58.2 163 24.5
Gohir.A13G178000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 1.3e-06 57.4 144 25.7
Gorai.009G068800 Gossypium raimondii HOM05D002728 ORTHO05D002874 1.6e-06 57.0 161 24.8
COL.COLO4_19047 Corchorus olitorius HOM05D002728 ORTHO05D002874 2.8e-06 56.2 162 24.1
Gohir.D05G068000 Gossypium hirsutum HOM05D002728 ORTHO05D002874 3.7e-06 55.8 161 24.8
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 4.8e-06 55.5 136 25.7
Gohir.A05G065400 Gossypium hirsutum HOM05D002728 ORTHO05D002874 6.3e-06 55.1 152 25.7
Manes.03G002500 Manihot esculenta HOM05D002728 ORTHO05D002874 6.3e-06 55.1 171 25.1
Thecc.09G005900 Theobroma cacao HOM05D002728 ORTHO05D002874 8.2e-06 54.7 150 26.0


User provided reference genes

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