Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR005850 Cardamine hirsuta HOM05D002303 ORTHO05D020332 4.7e-82 307.8 149 100.0
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 1.3e-63 246.5 150 84.0
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 9.2e-62 240.4 149 82.6
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 1.2e-61 240.0 150 81.3
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 8.6e-60 233.8 149 79.9
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 2.1e-58 229.2 150 77.3
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 2.1e-58 229.2 150 76.7
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 6.1e-58 227.6 149 77.9
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 6.1e-58 227.6 149 77.9
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 1.4e-57 226.5 149 77.2
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 1.2e-56 223.4 149 76.5
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 1.2e-56 223.4 149 76.5
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 4.4e-56 221.5 148 75.0
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 2.9e-55 218.8 148 75.7
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 1.8e-54 216.1 151 72.2
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 8.6e-52 207.2 143 68.5
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 5.6e-51 204.5 143 67.1
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 5.6e-51 204.5 143 67.1
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 7.3e-51 204.1 143 67.1
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 7.3e-51 204.1 143 66.4
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.2e-50 203.4 143 66.4
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.2e-50 203.4 143 66.4
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 2.1e-50 202.6 143 66.4
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 2.8e-50 202.2 160 64.4
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 2.8e-50 202.2 127 73.2
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 6.2e-50 201.1 160 63.8
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 8.0e-50 200.7 123 74.0
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 1.1e-49 200.3 160 63.1
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 1.1e-49 200.3 128 71.9
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 1.1e-49 200.3 128 71.9
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 1.4e-49 199.9 160 63.1
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 3.1e-49 198.7 132 69.7
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 4.0e-49 198.4 141 68.1
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 4.0e-49 198.4 141 68.1
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 8.9e-49 197.2 161 62.7
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 8.9e-49 197.2 168 60.7
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 2.0e-48 196.1 168 59.5
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 4.4e-48 194.9 130 71.5
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 9.8e-48 193.7 132 68.2
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 9.8e-48 193.7 146 64.4
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.3e-47 193.4 125 69.6
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 1.3e-47 193.4 146 64.4
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 1.7e-47 193.0 132 71.2
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 2.2e-47 192.6 158 62.0
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 2.9e-47 192.2 130 71.5
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 3.7e-47 191.8 141 65.2
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 3.7e-47 191.8 129 69.8
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 6.4e-47 191.0 141 65.2
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 8.3e-47 190.7 128 71.1
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 1.1e-46 190.3 126 70.6
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 1.9e-46 189.5 158 60.8
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 1.9e-46 189.5 130 70.8
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 2.4e-46 189.1 156 57.7
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 2.4e-46 189.1 144 64.6
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 3.2e-46 188.7 154 58.4
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 5.4e-46 188.0 128 68.8
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 5.4e-46 188.0 128 69.5
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 5.4e-46 188.0 126 66.7
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 7.0e-46 187.6 152 61.2
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 9.2e-46 187.2 160 60.0
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 1.2e-45 186.8 132 65.9
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 1.6e-45 186.4 151 59.6
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 1.6e-45 186.4 136 64.0
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 2.0e-45 186.0 160 58.8
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 2.7e-45 185.7 130 66.9
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 2.7e-45 185.7 130 66.9
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 3.5e-45 185.3 126 68.3
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 3.5e-45 185.3 128 68.8
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 4.6e-45 184.9 140 61.4
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 4.6e-45 184.9 156 60.3
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 6.0e-45 184.5 167 58.7
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 6.0e-45 184.5 129 67.4
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 1.0e-44 183.7 125 69.6
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 1.0e-44 183.7 125 69.6
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 1.0e-44 183.7 152 59.9
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.3e-44 183.3 129 65.9
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 1.7e-44 183.0 144 61.8
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 2.3e-44 182.6 152 60.5
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 3.0e-44 182.2 131 67.9
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 3.0e-44 182.2 129 66.7
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 5.0e-44 181.4 158 55.1
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 5.0e-44 181.4 158 55.1
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 5.0e-44 181.4 152 58.6
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 6.6e-44 181.0 128 65.6
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 6.6e-44 181.0 128 66.4
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 8.6e-44 180.6 127 67.7
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 8.6e-44 180.6 126 66.7
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 1.1e-43 180.3 135 63.7
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 1.1e-43 180.3 135 63.0
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 1.1e-43 180.3 135 63.7
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 1.5e-43 179.9 161 56.5
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 1.9e-43 179.5 158 58.2
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 1.9e-43 179.5 128 65.6
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 1.9e-43 179.5 130 66.9
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 2.5e-43 179.1 128 64.8
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 2.5e-43 179.1 168 57.1
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 3.3e-43 178.7 136 62.5
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 3.3e-43 178.7 157 56.7
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 9.5e-43 177.2 127 67.7
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 1.2e-42 176.8 128 64.1
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 1.2e-42 176.8 126 65.9
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 3.6e-42 175.3 114 71.1
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 3.6e-42 175.3 140 60.0
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 4.7e-42 174.9 125 67.2
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 4.7e-42 174.9 133 62.4
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 6.2e-42 174.5 158 55.7
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 1.1e-41 173.7 128 63.3
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 1.4e-41 173.3 133 60.9
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 3.1e-41 172.2 108 70.4
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 3.1e-41 172.2 132 62.1
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 3.1e-41 172.2 123 65.9
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 8.3e-39 164.1 110 69.1
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 2.4e-38 162.5 142 58.5
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 6.6e-36 154.5 100 70.0
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 4.7e-34 148.3 125 57.6
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 2.4e-33 146.0 92 71.7
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 2.4e-33 146.0 92 71.7
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 1.2e-32 143.7 150 49.3
TAR680G0003 Trochodendron aralioides HOM05D002303 ORTHO05D020332 1.2e-32 143.7 102 67.6
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 3.4e-32 142.1 120 57.5
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.6e-29 133.3 111 56.8
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 1.3e-28 130.2 153 45.1
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 1.3e-28 130.2 160 46.2
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 2.8e-26 122.5 154 43.5
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 3.6e-26 122.1 154 44.2
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.1e-25 120.6 129 46.5
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 5.8e-24 114.8 125 47.2
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 1.6e-21 106.7 73 69.9
Sp4g02400 Schrenkiella parvula HOM05D002303 ORTHO05D006504 2.1e-21 106.3 151 47.0
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 3.5e-21 105.5 89 57.3
Prupe.7G165100 Prunus persica HOM05D002303 ORTHO05D020332 1.0e-20 104.0 63 77.8
SEGI_25226 Sequoiadendron giganteum HOM05D002303 ORTHO05D020332 5.3e-17 91.7 64 67.2
RcHm_v2.0_Chr5g0051731 Rosa chinensis HOM05D002303 ORTHO05D020332 5.8e-16 88.2 154 39.0
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 9.9e-16 87.4 63 63.5
CBR_g42136 Chara braunii HOM05D002303 ORTHO05D006504 1.7e-15 86.7 135 39.3
MBI03_g10293_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D020332 4.9e-15 85.1 55 67.3
Dinv28378 Davidia involucrata HOM05D002303 ORTHO05D020332 1.6e-13 80.1 59 57.6
MCO15G060 Micromonas commoda HOM05D002303 ORTHO05D006504 1.9e-11 73.2 133 33.1
Cre04.g226450 Chlamydomonas reinhardtii HOM05D002303 ORTHO05D006504 4.8e-10 68.6 107 35.5
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 1.3e-07 60.5 69 46.4


User provided reference genes

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