Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.4e-226 789.3 384 100.0
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 2.6e-225 785.0 384 99.5
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 6.0e-166 587.8 388 75.0
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.5e-164 583.2 388 74.5
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 3.3e-164 582.0 381 75.9
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 7.4e-164 580.9 388 74.0
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 3.4e-161 572.0 395 73.2
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 1.3e-160 570.1 381 74.0
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 1.4e-159 566.6 380 73.2
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.9e-159 566.2 388 74.5
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 1.9e-159 566.2 392 72.2
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 5.5e-159 564.7 383 74.2
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 2.3e-157 559.3 380 73.2
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 3.9e-157 558.5 392 70.9
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 1.9e-156 556.2 392 71.4
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.5e-156 555.8 382 71.5
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.6e-155 553.1 378 71.4
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 2.1e-155 552.7 388 72.2
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.1e-154 550.4 388 71.9
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 5.3e-154 548.1 392 69.4
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 1.7e-152 543.1 392 68.6
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 1.9e-151 539.7 389 70.4
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 9.3e-151 537.3 389 70.2
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 7.9e-150 534.3 377 71.4
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 3.3e-148 528.9 382 69.6
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 4.3e-148 528.5 379 69.4
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 7.4e-148 527.7 389 67.6
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 9.7e-148 527.3 379 69.1
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 1.3e-147 526.9 373 69.2
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.6e-147 526.6 384 69.0
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.6e-147 526.6 384 68.5
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.2e-147 526.2 395 68.1
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 2.2e-147 526.2 374 70.6
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 2.8e-147 525.8 387 69.3
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 6.3e-147 524.6 375 70.4
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.1e-146 523.9 379 69.7
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.4e-146 523.5 375 69.9
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.8e-146 523.1 382 69.6
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 3.1e-146 522.3 377 69.8
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 5.3e-146 521.5 383 68.4
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.2e-145 520.4 375 69.1
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 1.2e-145 520.4 376 69.9
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 1.5e-145 520.0 383 67.9
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.5e-145 520.0 375 69.6
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 4.5e-145 518.5 372 69.6
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 8.5e-144 514.2 384 67.7
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.9e-143 513.1 373 68.1
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.2e-142 510.4 377 67.6
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 1.2e-142 510.4 375 67.2
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 2.1e-142 509.6 378 66.7
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 3.6e-142 508.8 376 68.1
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 6.7e-141 504.6 380 66.6
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 2.5e-140 502.7 356 70.8
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 2.2e-139 499.6 380 66.1
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 2.8e-139 499.2 390 64.6
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 6.3e-139 498.0 373 65.7
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 6.3e-139 498.0 370 68.6
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 9.1e-138 494.2 382 65.2
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.5e-137 493.4 382 64.7
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.6e-137 492.7 378 66.1
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.4e-135 486.9 390 65.6
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 8.8e-133 477.6 363 66.4
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.1e-132 477.2 378 64.3
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.1e-132 477.2 381 64.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 2.0e-132 476.5 396 61.9
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 4.4e-132 475.3 352 67.9
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.3e-131 473.8 379 63.6
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 4.8e-131 471.9 380 63.4
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 1.1e-130 470.7 410 60.7
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 2.2e-128 463.0 325 72.6
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 2.9e-128 462.6 340 69.7
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.6e-126 456.8 377 60.5
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 1.5e-124 450.3 384 59.4
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 1.2e-121 440.7 322 69.6
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 6.5e-120 434.9 372 60.5
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.9e-119 433.3 332 65.1
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.2e-118 430.6 382 59.7
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.3e-115 420.6 295 72.5
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 5.2e-109 398.7 304 64.5
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 4.1e-106 389.0 452 48.5
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.1e-102 376.7 290 65.9
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 6.1e-102 375.2 392 52.8
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 1.5e-100 370.5 373 51.7
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 1.3e-99 367.5 346 56.4
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.2e-97 360.9 377 56.5
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 2.3e-96 356.7 461 44.9
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 3.3e-95 352.8 284 64.1
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.6e-94 350.5 314 58.3
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 1.1e-85 321.2 539 38.4
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.1e-82 309.3 374 50.3
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 2.5e-79 300.1 274 56.9
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 2.8e-78 296.6 280 58.2
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 6.6e-72 275.4 243 60.1
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.5e-71 273.5 173 77.5
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.6e-71 272.3 263 57.8
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 9.6e-71 271.6 166 77.1
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.8e-69 267.3 350 46.0
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 8.9e-69 265.0 386 39.6
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 5.8e-68 262.3 266 53.0
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 2.4e-66 256.9 297 49.2
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.2e-65 254.6 417 37.6
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 8.7e-64 248.4 248 57.3
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.8e-61 240.7 154 74.7
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 1.8e-61 240.7 219 59.4
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 9.6e-55 218.4 403 39.5
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 3.5e-49 199.9 194 53.1
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 9.3e-42 175.3 111 74.8
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.0e-40 171.8 395 31.6
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 3.7e-38 163.3 124 66.9
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 1.5e-31 141.4 302 34.8
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-31 140.6 139 51.8
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 4.3e-31 139.8 82 78.0
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 6.3e-30 136.0 175 41.1
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.6e-28 130.6 96 65.6
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.7e-27 127.9 80 75.0
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.4e-26 124.8 93 67.7
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.2e-26 123.2 80 72.5
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 2.0e-23 114.4 70 81.4
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.9e-18 97.8 62 71.0
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.5e-18 96.3 63 63.5
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.6e-17 94.7 64 68.8
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.7e-17 94.0 63 61.9
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 5.2e-16 89.7 120 43.3
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 5.7e-15 86.3 65 64.6
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.2e-12 78.6 59 61.0
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 2.2e-11 74.3 67 59.7
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.1e-10 72.0 45 68.9
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 2.5e-10 70.9 84 44.0
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 4.2e-10 70.1 67 50.7
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 5.7e-07 59.7 55 58.2
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 7.5e-07 59.3 28 89.3


User provided reference genes

Program Settings