Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1951.8 972 100.0
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1154.4 978 62.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1153.7 979 61.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1150.2 977 62.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1148.7 977 62.4
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1142.9 975 62.1
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1142.9 981 61.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1142.1 1007 60.9
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1137.9 975 62.5
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1135.9 904 64.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1135.6 1018 59.3
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1128.6 1033 59.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1128.2 982 60.6
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1126.7 1007 60.5
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1122.1 975 61.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1110.9 941 60.9
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1107.4 1024 59.2
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1094.3 970 59.0
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1094.0 974 58.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1093.6 979 59.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1091.6 1052 55.9
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1078.2 991 57.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.7e-310 1069.3 969 58.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.5e-309 1065.4 973 58.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.3e-307 1058.9 972 57.3
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.4e-304 1049.7 969 56.8
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.2e-304 1048.5 747 69.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 7.8e-303 1043.9 986 57.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.5e-301 1039.6 998 56.3
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.2e-300 1036.6 986 57.0
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 6.2e-300 1034.2 974 56.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.0e-300 1033.9 973 58.8
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.4e-299 1033.1 999 55.6
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.3e-299 1032.3 984 53.8
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 3.1e-299 1031.9 914 58.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 3.1e-299 1031.9 974 56.5
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 3.2e-296 1021.9 982 53.5
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.7e-295 1018.8 987 54.7
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.5e-295 1018.5 994 54.5
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 6.6e-294 1014.2 976 54.7
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 4.3e-293 1011.5 958 56.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 7.3e-293 1010.7 974 56.0
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.2e-292 1010.0 981 55.1
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 4.7e-292 1008.1 979 54.9
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 5.2e-291 1004.6 946 56.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.2e-290 1003.4 984 54.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.5e-285 986.5 966 55.0
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 3.1e-283 978.8 753 64.1
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.0e-283 978.4 985 53.3
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 4.0e-283 978.4 978 54.5
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.0e-283 978.4 957 55.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 6.8e-283 977.6 981 54.3
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 4.4e-282 974.9 970 54.4
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 5.4e-280 968.0 958 54.6
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.2e-279 966.8 688 68.0
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 2.1e-279 966.1 899 56.7
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 6.2e-276 954.5 1021 51.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 6.9e-275 951.0 1021 51.7
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.7e-273 946.4 1018 51.8
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.2e-273 946.0 984 52.4
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.9e-273 944.9 989 51.6
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.4e-272 943.3 968 53.1
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.9e-272 943.0 969 52.9
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.2e-271 940.3 972 52.9
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.1e-271 939.5 981 53.2
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.3e-270 936.0 981 52.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.0e-270 935.6 979 52.0
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.5e-269 932.6 997 51.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 2.5e-269 932.6 968 52.6
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 5.6e-269 931.4 979 52.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 3.6e-268 928.7 995 51.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.4e-267 926.0 1038 50.5
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 4.5e-266 921.8 830 59.6
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.2e-263 913.7 924 53.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 3.5e-263 912.1 979 50.9
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.9e-263 911.0 1003 50.5
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 3.3e-261 905.6 1033 49.6
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.9e-255 884.4 906 53.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 4.8e-252 875.2 981 49.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 5.0e-249 865.1 981 48.3
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.5e-247 859.0 972 49.1
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 8.7e-246 854.4 1007 49.2
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 8.5e-241 837.8 929 50.5
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.9e-238 828.9 699 60.1
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.6e-234 816.2 978 46.8
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 4.8e-228 795.4 756 58.2
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.3e-225 787.3 530 72.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.8e-222 776.9 575 65.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.3e-221 772.7 970 46.3
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.7e-215 752.3 754 55.7
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 4.1e-211 739.2 987 45.0
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.0e-210 736.9 463 75.6
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.2e-209 733.4 557 64.6
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 2.0e-205 720.3 481 74.4
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 2.4e-203 713.4 825 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 8.0e-199 698.4 1062 40.4
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 6.0e-186 655.6 1157 37.3
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 3.9e-185 652.9 806 43.5
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.5e-184 648.3 979 40.6
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-169 600.9 714 45.8
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.1e-168 598.2 604 52.5
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-164 583.2 759 43.3
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.8e-158 564.3 1039 37.1
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-148 530.8 800 41.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.7e-143 513.5 969 35.6
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-141 508.1 449 59.9
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-141 508.1 449 59.9
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 4.9e-140 503.1 278 84.2
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 9.3e-139 498.8 313 73.8
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-137 494.2 479 52.2
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-134 485.0 616 43.8
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-123 448.7 618 42.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.6e-122 444.9 644 43.8
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 3.6e-122 443.7 359 63.5
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.0e-116 425.6 494 50.4
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-101 374.0 840 32.9
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.9e-100 370.9 313 61.7
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.2e-98 365.5 448 48.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.1e-94 350.5 621 38.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.4e-94 350.1 779 33.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 7.7e-93 346.3 416 48.8
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 1.1e-91 342.4 460 44.3
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 8.6e-84 316.2 420 42.1
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.5e-80 305.4 408 44.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.3e-71 275.8 163 75.5
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.7e-71 275.4 641 31.7
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.7e-66 257.3 139 83.5
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 6.2e-66 256.9 270 48.1
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.4e-54 217.2 191 55.5
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.5e-51 209.1 164 66.5
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 4.7e-50 204.1 109 86.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.4e-49 202.6 379 36.7
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 6.9e-49 200.3 726 26.9
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.9e-47 194.9 172 61.6
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.4e-47 193.4 159 56.6
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 9.0e-41 173.3 757 24.3
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.8e-40 170.6 163 58.9
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 7.6e-40 170.2 105 77.1
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 7.6e-40 170.2 551 29.4
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 2.2e-39 168.7 262 35.5
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.1e-38 166.4 110 74.5
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 3.1e-33 148.3 277 38.6
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.1e-30 139.8 88 72.7
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.8e-25 122.5 84 69.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.6e-24 117.1 667 25.0
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.7e-23 115.9 132 47.0
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.9e-23 115.2 86 62.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.5e-21 108.2 90 63.3
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.0e-21 107.5 83 71.1
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.8e-20 105.9 109 47.7
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.7e-15 89.4 179 40.2
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 1.1e-14 86.7 58 67.2
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 1.6e-10 72.8 75 50.7
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 8.2e-10 70.5 109 40.4
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 2.2e-07 62.4 124 37.9
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-07 62.4 71 45.1
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 5.5e-06 57.8 121 34.7


User provided reference genes

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